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We investigate the interrelations between labeled trees and ultrametric spaces generated by these trees. The labeled trees, which generate complete ultrametrics, totally bounded ultrametrics, and discrete ones, are characterized up to…

Let $T$ be a tree, a vertex of degree one and a vertex of degree at least three is called a leaf and a branch vertex, respectively. The set of leaves of $T$ is denoted by $Leaf(T)$. The subtree $T-Leaf(T)$ of $T$ is called the stem of $T$…

A $\mathbb{T}$-gain graph is a simple graph in which a unit complex number is assigned to each orientation of an edge, and its inverse is assigned to the opposite orientation. The associated adjacency matrix is defined canonically, and is…

The class of self-nested trees presents remarkable compression properties because of the systematic repetition of subtrees in their structure. In this paper, we provide a better combinatorial characterization of this specific family of…

Suppose N is a phylogenetic network indicating a complicated relationship among individuals and taxa. Often of interest is a much simpler network, for example, a species tree T, that summarizes the most fundamental relationships. The…

We give a descriptive construction of trees for multi-ended graphs, which yields yet another proof of Stallings' theorem on ends of groups. Even though our proof is, in principle, not very different from already existing proofs and it draws…

One of the important features of an interconnection network is its ability to efficiently simulate programs or parallel algorithms written for other architectures. Such a simulation problem can be mathematically formulated as a graph…

Let $\mathbf G$ be a graphing, that is a Borel graph defined by $d$ measure preserving involutions. We prove that if $\mathbf G$ is {\em treeable} then it arises as the local limit of some sequence $(G_n)_{n\in\mathbb{N}}$ of graphs with…

A k-tree is either a complete graph on (k+1) vertices or given a k-tree G' with n vertices, a k-tree G with (n+1) vertices can be constructed by introducing a new vertex v and picking a k-clique Q in G' and then joining each vertex u in Q.…

We investigate clique trees of infinite locally finite chordal graphs. Our main contribution is a bijection between the set of clique trees and the product of local finite families of finite trees. Even more, the edges of a clique tree are…

Any function can be constructed using a hierarchy of simpler functions through compositions. Such a hierarchy can be characterized by a binary rooted tree. Each node of this tree is associated with a function which takes as inputs two…

The Pathwidth Theorem states that if a class of graphs has unbounded pathwidth, then it contains all trees as graph minors. We prove a similar result for dense graphs. More precisely, we give a finite family of tree-like patterns and prove…

We show that every graph admits a canonical tree-like decomposition into its $k$-edge-connected pieces for all $k\in\mathbb{N}\cup\{\infty\}$ simultaneously.

A $k$-block in a graph $G$ is a maximal set of at least $k$ vertices no two of which can be separated in $G$ by removing less than $k$ vertices. It is separable if there exists a tree-decomposition of adhesion less than $k$ of $G$ in which…

In mathematical phylogenetics, evolutionary relationships are often represented by trees and networks. The latter are typically used whenever the relationships cannot be adequately described by a tree, which happens when so-called…

This work addresses the intrinsic relationship between trees and networks (i.e. graphs). A complete (invertible) mapping is presented which allows trees to be mapped into weighted graphs and then backmapped into the original tree without…

In this work, we investigate the relationship between $k$-repre\-sentable graphs and graphs representable by $k$-local words. In particular, we show that every graph representable by a $k$-local word is $(k+1)$-representable. A previous…

This is a survey article on trees, with a modest number of proofs to give a flavor of the way these topologies can be efficiently handled. Trees are defined in set-theorist fashion as partially ordered sets in which the elements below each…

In previous work, we defined the intersection graph of a chord diagram associated with a string link (as in the theory of finite type invariants). In this paper, we look at the case when this graph is a tree, and we show that in many cases…

We consider classes of graphs, which we call thick graphs, that have the vertices of a corresponding thin graph replaced by cliques and the edges replaced by cobipartite graphs In particular, we consider the case of thick forests, which we…