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Mathematical modeling and analysis can provide insight on the dynamics of ecosystems which maintain biodiversity in the face of competitive and prey-predator interactions. Of primary interests are the underlying structure and features which…

Populations and Evolution · Quantitative Biology 2017-01-03 Cameron J. Browne

In a recent article Hontelez and colleagues investigate the prospects for elimination of HIV in South Africa through expanded access to antiretroviral therapy (ART) using STDSIM, a micro-simulation model. One of the first published models…

Quantitative Methods · Quantitative Biology 2014-03-28 Brian Williams

In this article, we consider an HIV/AIDS epidemic model with four classes of individuals. We have discussed about basic properties of the system and found the basic reproduction number $R_0$ of the system. The stability analysis of the…

Dynamical Systems · Mathematics 2023-04-18 Nouar Chorfi , Salem Abdelmalek , Samir Bendoukha

We propose a population model for HIV-TB co-infection dynamics by considering treatments for HIV infection, active tuberculosis and co-infection. The HIV only and TB only models are analyzed separately, as well as full model. The basic…

Populations and Evolution · Quantitative Biology 2018-08-10 Sachin Kumar , Shikha Jain

Human immunodeficiency virus (HIV) evolves with extraordinary rapidity. However, its evolution is constrained by interactions between mutations in its fitness landscape. Here we show that an Ising model describing these interactions,…

Populations and Evolution · Quantitative Biology 2016-02-24 Thomas C. Butler , John P. Barton , Mehran Kardar , Arup K. Chakraborty

In this paper, the mathematical model of HIV infection for CD8+ T-cells is illustrated. The homotopy analysis method and the Laplace transformations are combined for solving this model. Also, the convergence theorem is proved to demonstrate…

Computational Engineering, Finance, and Science · Computer Science 2019-07-03 Samad Noeiaghdam , Emran Khoshrouye Ghiasi

Viral infections can be broadly divided into infections that are cleared from the host (acute) and those that persist (chronic). Why some viruses establish chronic infections while other do not is poorly understood. One possibility is that…

Populations and Evolution · Quantitative Biology 2009-05-13 Vitaly V. Ganusov , Aron E. Lukacher , Anthony M. Byers

In this paper we consider the evolution of the HIV infection under a highly effective treatment based on a combination of RTI and/or PI drugs. This is usually modelled with a set of ODEs where the drug efficacy is a constant. In this paper…

Populations and Evolution · Quantitative Biology 2007-05-23 G. Della Rocca , M. Sammartino , L. Seta

HIV-1 can disseminate between susceptible cells by two mechanisms: cell-free infection following fluid-phase diffusion of virions and by highly-efficient direct cell-to-cell transmission at immune cell contacts. The contribution of this…

Populations and Evolution · Quantitative Biology 2024-01-02 Changwang Zhang , Shi Zhou , Elisabetta Groppelli , Pierre Pellegrino , Ian Williams , Persephone Borrow , Benjamin M. Chain , Clare Jolly

We propose a time-parameterized analogy between the thermodynamic behavior of a 3-level energy system and the progression of the HIV infection described by the cell population evolution generated by an appropriated cellular automata model.…

Populations and Evolution · Quantitative Biology 2020-06-24 Ramón E. R. González , P. H. Figueirêdo , S. Coutinho

An increasing number of control techniques are introduced to HIV infection problem to explore the options of helping clinical testing, optimizing drug treatments and to study the drug resistance situations. In such cases, complete/accurate…

Optimization and Control · Mathematics 2019-07-17 Fei Sun , Kamran Turkoglu

In this letter, we mainly consider an MSM (men have sex with men) network to analysis how monogamy behavior can influence the transmission of HIV. By calculating and analyzing the basic reproductive number of that network, we find the…

Populations and Evolution · Quantitative Biology 2020-07-15 Chentong Li , Jiawei liu , Yicang Zhou

In this paper, we construct a model to describe the transmission of HIV in a homogeneous host population. By considering the specific mechanism of HIV, we derive a model structured in three successive stages: (i) primary infection, (ii)…

Analysis of PDEs · Mathematics 2019-11-18 Mboya Ba , Ramsès Djidjou-Demasse , Mountaga Lam , Jean-Jules Tewa

Knowledge of the time at which an HIV-infected individual seroconverts, when the immune system starts responding to HIV infection, plays a vital role in the design and implementation of interventions to reduce the impact of the HIV…

Applications · Statistics 2017-06-09 Loumpiana Koulai , Anne Presanis , Gary Murphy , Barbara Suligoi , Daniela De Angelis

In early HIV infection, the virus population escapes from multiple CD8+ cell responses. The later an escape mutation emerges, the slower it outgrows its competition, i. e. the escape rate is lower. This pattern could indicate that the…

Populations and Evolution · Quantitative Biology 2014-09-30 Victor Garcia , Roland Regoes

We consider a recent coinfection model for Tuberculosis (TB), Human Immunodeficiency Virus (HIV) infection and Acquired Immunodeficiency Syndrome (AIDS) proposed in [Discrete Contin. Dyn. Syst. 35 (2015), no. 9, 4639--4663]. We introduce…

Optimization and Control · Mathematics 2018-05-22 Roman Denysiuk , Cristiana J. Silva , Delfim F. M. Torres

We study the early stages of viral infection, and the distribution of times to obtain a persistent infection. The virus population proliferates by entering and reproducing inside a target cell until a sufficient number of new virus…

Populations and Evolution · Quantitative Biology 2019-07-11 Carmel Sagi , Michael Assaf

Chronic infections of the human immunodeficiency virus (HIV) create a very complex co-evolutionary process, where the virus tries to escape the continuously adapting host immune system. Quantitative details of this process are largely…

Populations and Evolution · Quantitative Biology 2022-07-27 Andrea Mazzolini , Thierry Mora , Aleksandra M Walczak

The objective is to model longitudinal and survival data jointly taking into account the dependence between the two responses in a real HIV/AIDS dataset using a shared parameter approach inside a Bayesian framework. We propose a linear…

Applications · Statistics 2016-05-02 Rui Martins

Oxidative stress, a reaction caused by the imbalance between the reactive oxygen species of human organism and its ability to detoxify reactive intermediates and to repair the resulting damage plays an important role in HIV-infections. On…

Populations and Evolution · Quantitative Biology 2018-08-08 Shaoli Wang , Fei Xu , Xinyu Song