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This work investigates the emergence of oscillations in one of the simplest cellular signaling networks exhibiting oscillations, namely, the dual-site phosphorylation and dephosphorylation network (futile cycle), in which the mechanism for…

Molecular Networks · Quantitative Biology 2019-02-05 Carsten Conradi , Maya Mincheva , Anne Shiu

We develop a theory of collective phase description for globally coupled noisy excitable elements exhibiting macroscopic oscillations. Collective phase equations describing macroscopic rhythms of the system are derived from Langevin-type…

Adaptation and Self-Organizing Systems · Physics 2025-08-19 Yoji Kawamura , Hiroya Nakao , Yoshiki Kuramoto

By considering the master equation of the partially asymmetric diffusion process on a one-dimensional lattice, the most general boundary condition (i.e. interactions) for the multi-species reaction-diffusion processes is considered.…

Statistical Mechanics · Physics 2009-11-11 M. Alimohammadi , Y. Naimi

This paper is concerned with quasilinear parabolic reaction-diffusion-advection systems on extended domains. Frameworks for well-posedness in Hilbert spaces and spaces of continuous functions are presented, based on known results using…

Dynamical Systems · Mathematics 2013-05-17 Martin Meyries , Jens D. M. Rademacher , Eric Siero

Reactivity boundaries that divide the destination and the origin of trajectories are of crucial importance to reveal the mechanism of reactions. We investigate whether such reactivity boundaries can be extracted for higher index saddles in…

Chemical Physics · Physics 2013-06-27 Yutaka Nagahata , Hiroshi Teramoto , Chun-Biu Li , Shinnosuke Kawai , Tamiki Komatsuzaki

Plasmonic excitations behave fundamentally different in layered materials in comparison to bulk systems. They form gapless modes, which in turn couple at low energies to the electrons. Thereby they can strongly influence superconducting…

Superconductivity · Physics 2018-03-14 M. Rösner , R. E. Groenewald , G. Schönhoff , J. Berges , S. Haas , T. O. Wehling

We present a dynamical system that naturally exhibits two unstable attractors that are completely enclosed by each others basin volume. This counter-intuitive phenomenon occurs in networks of pulse-coupled oscillators with delayed…

Chaotic Dynamics · Physics 2008-12-09 Christoph Kirst , Marc Timme

We analyze a family of clustered excitatory-inhibitory neural networks and the underlying bifurcation structures that arise because of permutation symmetries in the network as the global coupling strength $g$ is varied. We primarily…

Chaotic Dynamics · Physics 2022-12-09 Ross Parker , Andrea K. Barreiro

A unified electrodynamic approach to the guided-wave excitation theory is generalized to the waveguiding structures containing a hypothetical space-dispersive medium with drifting charge carriers possessing simultaneously elastic,…

Classical Physics · Physics 2009-10-31 A. A. Barybin

We investigate diffusion of excitation in one- and two-dimensional lattices with random on-site energies and deterministic long-range couplings (hopping) inversely proportional to the distance. Three regimes of diffusion are observed in…

Disordered Systems and Neural Networks · Physics 2020-11-18 Karol Kawa , Paweł Machnikowski

In this paper the Turing pattern formation mechanism of a two component reaction-diffusion system modeling the Schnakenberg chemical reaction coupled to linear cross-diffusion terms is studied. The linear cross-diffusion terms favors the…

Pattern Formation and Solitons · Physics 2017-05-08 G. Gambino , S. Lupo , M. Sammartino

The multiple scale expansion method is used to derive amplitude equations for a system with thermohaline convection in the neighborhood of Hopf and Taylor bifurcation points and at the double zero point of the dispersion relation. A complex…

Fluid Dynamics · Physics 2015-05-13 S. B. Kozitskiy

Propagation of uncertainty in dynamical systems is a significant challenge. Here we focus on random multiscale ordinary differential equation models. In particular, we study Hopf bifurcation in the fast subsystem for random initial…

Dynamical Systems · Mathematics 2018-12-24 Christian Kuehn

Chemical, physical and ecological systems passing through a saddle-node bifurcation will, momentarily, find themselves balanced at a semi-stable steady state. If perturbed by noise, such systems will escape from the zero-steady state, with…

Statistical Mechanics · Physics 2020-01-08 Alastair Jamieson-Lane , Eric N. Cytrynbaum

We classify the local bifurcations of one dov quantum billiards, showing that only saddle-center bifurcations can occur. We analyze the resulting planar system when there is no coupling in the superposition state. In so doing, we also…

Chaotic Dynamics · Physics 2015-06-26 Mason A. Porter , Richard L. Liboff

Steady states of the Swift--Hohenberg equation are studied. For the associated four--dimensional ODE we prove that on the energy level $E=0$ two smooth branches of even periodic solutions are created through the saddle-node bifurcation. We…

Dynamical Systems · Mathematics 2024-09-06 Jakub Czwórnóg , Daniel Wilczak

In living cells, cycles of formation and dissolution of liquid droplets can mediate biological functions such as DNA repair. However, the minimal physicochemical prerequisite for such droplet oscillations remains elusive. Here, we present a…

Soft Condensed Matter · Physics 2025-03-17 Ivar S. Haugerud , Hidde D. Vuijk , Job Boekhoven , Christoph A. Weber

In many physical systems, degrees of freedom are coupled \emph{via} hydrodynamic forces, even in the absence of Hamiltonian interactions. A particularly important and widespread example concerns the transport of microscopic particles in…

Soft Condensed Matter · Physics 2025-02-11 Juliette Lacherez , Maxime Lavaud , Yacine Amarouchene , David S. Dean , Thomas Salez

Nonlinear evolution of a reaction--super-diffusion system near a Hopf bifurcation is studied. Fractional analogues of complex Ginzburg-Landau equation and Kuramoto-Sivashinsky equation are derived, and some of their analytical and numerical…

Pattern Formation and Solitons · Physics 2009-11-13 Y. Nec , A. A. Nepomnyashchy , A. A. Golovin

Motivated by a stochastic differential equation describing the dynamics of interfaces, we study the bifurcation behavior of a more general class of such equations. These equations are characterized by a 2-dimensional phase space (describing…

Chaotic Dynamics · Physics 2012-04-11 Stewart E. Barnes , Jean-Pierre Eckmann , Thierry Giamarchi , Vivien Lecomte