Related papers: From quantum groups to genetic mutations
One of the main properties of biological systems is modularity, which manifests itself at all levels of their organization, starting with the level of molecular genetics, ending with the level of whole organisms and their communities. In a…
Quantum mechanics with a generalized uncertainty principle arises through a representation of the commutator $[\hat{x}, \hat{p}] = i f(\hat{p})$. We apply this deformed quantization to free scalar field theory for $f_\pm =1\pm \beta p^2$.…
Quantum machine learning (QML) is rapidly transitioning from theoretical promise to practical relevance across data-intensive scientific domains. In this Review, we provide a structured overview of recent advances that bridge foundational…
A unified theory of phase transitions and quantum effects in quantum anharmonic crystals is presented. In its framework, the relationship between these two phenomena is analyzed. The theory is based on the representation of the model Gibbs…
The geometrical description of Quantum Mechanics is reviewed and proposed as an alternative picture to the standard ones. The basic notions of observables, states, evolution and composition of systems are analised from this perspective, the…
We study the representation theory of a quantum symmetric pair $(\mathbf{U},\mathbf{U}^{\jmath})$ with two parameters $p,q$ of type AIII, by using highest weight theory and a variant of Kashiwara's crystal basis theory. Namely, we classify…
The quantum group SL_q(2,R) at roots of unity is introduced by means of duality pairings with the quantum algebra U_q(sl(2,R)). Its irreducible representations are constructed through the universal T-matrix. An invariant integral on this…
Current quantum theories of an elementary free particle assume unitary space inversion and anti-unitary time reversal operators. In so doing robust classes of possible theories are discarded. The present work shows that consistent theories…
Mutations are typically classified by their effects on the nucleotide sequence and by their size. Here, we argue that if our main aim is to understand the effect of mutations on evolutionary outcomes (such as adaptation or speciation), we…
This work aims at showing the relevance and the applications possibilities of the Fibonacci sequence, and also its q-deformed or quantum extension, in the study of the genetic code(s). First, after the presentation of a new formula, an…
Free-field formalism for quantum groups provides a special choice of coordinates on a quantum group. In these coordinates the construction of associated integrable system is especially simple. This choice also fits into general framework of…
The Darwinian paradigm of biological evolution is based on the separability of the variation and selection processes. As a result, the population thinking had always been an integral part of the Darwinian approach. I propose an alternative…
Symmetries impose structure on the Hilbert space of a quantum mechanical model. The mathematical units of this structure are the irreducible representations of symmetry groups and I consider how they function as conceptual units of…
In this paper, two new families of MDS quantum convolutional codes are constructed. The first one can be regarded as a generalization of \cite[Theorem 6.5]{GGGlinear}, in the sense that we do not assume that $q\equiv1\pmod{4}$. More…
Several technological applications require the translation of a protein into a nucleic acid that codes for it (``backtranslation''). The degeneracy of the genetic code makes this translation ambiguous; moreover, not every translation is…
The standard genetic code is known to be much more efficient in minimizing adverse effects of misreading errors and one-point mutations in comparison with a random code having the same structure, i.e. the same number of codons coding for…
Quantum Machine Learning (QML) models are aimed at learning from data encoded in quantum states. Recently, it has been shown that models with little to no inductive biases (i.e., with no assumptions about the problem embedded in the model)…
Quantum chromodynamics in two spacetime dimensions admits a finite non-invertible symmetry described mathematically by a fusion category. This symmetry is spontaneously broken at long distances, leading to distinct vacua. When the theory…
To support comparative genomics, population genetics, and medical genetics, we propose that a reference genome should come with a scheme for mapping each base in any DNA string to a position in that reference genome. We refer to a…
We carry out a generalization of quantum group co-representations in order to encode in this structure those cases where non-commutativity between endomorphism matrix entries and quantum space coordinates happens.