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Concepts in a certain domain of science are linked via intrinsic connections reflecting the structure of knowledge. To get a qualitative insight and a quantitative description of this structure, we perform empirical analysis and modeling of…

Digital Libraries · Computer Science 2021-08-10 Vasyl Palchykov , Mariana Krasnytska , Olesya Mryglod , Yurij Holovatch

In this paper we present a network model to study the impact of spatial distribution of constituents, coupling between them and diffusive processes in the context of biological situations. The model is in terms of network of mobile elements…

Molecular Networks · Quantitative Biology 2007-05-23 Kanchan Thadani , Ashutosh

Many networks have nodes located in physical space, with links more common between closely spaced pairs of nodes. For example, the nodes could be wireless devices and links communication channels in a wireless mesh network. We describe…

Networking and Internet Architecture · Computer Science 2019-02-14 Carl Dettmann , Orestis Georgiou , Pete Pratt

Complex dynamical systems are often modeled as networks, with nodes representing dynamical units which interact through the network's links. Gene regulatory networks, responsible for the production of proteins inside a cell, are an example…

Statistical Mechanics · Physics 2009-09-30 Zoran Levnajić

The arrangements of particles and forces in granular materials have a complex organization on multiple spatial scales that ranges from local structures to mesoscale and system-wide ones. This multiscale organization can affect how a…

Soft Condensed Matter · Physics 2018-04-06 Lia Papadopoulos , Mason A. Porter , Karen E. Daniels , Danielle S. Bassett

Understanding the rules underlying organismal development is a major unsolved problem in biology. Each cell in a developing organism responds to signals in its local environment by dividing, excreting, consuming, or reorganizing, yet how…

Cell Behavior · Quantitative Biology 2025-08-20 Ramya Deshpande , Francesco Mottes , Ariana-Dalia Vlad , Michael P. Brenner , Alma dal Co

Dimensionality is one of the most important properties of complex physical systems. However, only recently this concept has been considered in the context of complex networks. In this paper we further develop the previously introduced…

Physics and Society · Physics 2013-08-19 Filipi Nascimento Silva , Luciano da Fontoura Costa

In conventional cellular networks, for base stations (BSs) that are deployed far away from each other, it is general to assume them to be mutually independent. Nevertheless, after long-term evolution of cellular networks in various…

Social and Information Networks · Computer Science 2016-12-16 Chao Yuan , Zhifeng Zhao , Rongpeng Li , Meng Li , Honggang Zhang

We develop a continuum limit and mean-field theory for interacting particle systems (IPS) on self-similar networks, a new class of discrete models whose large-scale behavior gives rise to nonlocal evolution equations on fractal domains.…

Dynamical Systems · Mathematics 2026-02-02 Georgi S. Medvedev

We assume that the points in volumes smaller than an elementary volume (which may have a Planck size) are indistinguishable in any physical experiment. This naturally leads to a picture of a discrete space with a finite number of degrees of…

High Energy Physics - Theory · Physics 2026-01-07 Ali H. Chamseddine , Viatcheslav Mukhanov

Spatially constrained planar networks are frequently encountered in real-life systems. In this paper, based on a space-filling disk packing we propose a minimal model for spatial maximal planar networks, which is similar to but different…

Statistical Mechanics · Physics 2009-08-05 Zhongzhi Zhang , Jihong Guan , Bailu Ding , Lichao Chen , Shuigeng Zhou

For networks of coupled dynamical systems we characterize admissible functions, that is, functions whose gradient is an admissible vector field. The schematic representation of a gradient network dynamical system is of an undirected cell…

Dynamical Systems · Mathematics 2015-09-30 Miriam Manoel , Mark Roberts

We present a general computational theory of stem cell networks and their developmental dynamics. Stem cell networks are special cases of developmental control networks. Our theory generates a natural classification of all possible stem…

Other Quantitative Biology · Quantitative Biology 2016-07-18 Eric Werner

Models of complex networks often incorporate node-intrinsic properties abstracted as hidden variables. The probability of connections in the network is then a function of these variables. Real-world networks evolve over time, and many…

Physics and Society · Physics 2021-05-19 Harrison Hartle , Fragkiskos Papadopoulos , Dmitri Krioukov

Physical networks are made of nodes and links that are physical objects embedded in a geometric space. Understanding how the mutual volume exclusion between these elements affects the structure and function of physical networks calls for a…

Statistical Mechanics · Physics 2024-06-14 Gábor Pete , Ádám Timár , Sigurdur Örn Stefánsson , Ivan Bonamassa , Márton Pósfai

Phylogenetic networks are becoming of increasing interest to evolutionary biologists due to their ability to capture complex non-treelike evolutionary processes. From a combinatorial point of view, such networks are certain types of rooted…

Combinatorics · Mathematics 2019-10-21 Katharina T. Huber , Guillaume E. Scholz

Modern communication networks are inherently complex in nature. First of all, they have a large number of heterogeneous components. Secondly, their connectivity is extremely dynamic. Nodes can come and go, links can be removed and added…

Social and Information Networks · Computer Science 2017-08-08 Bisma S. Khan , Muaz A. Niazi

Due to the increasing heterogeneity and deployment density of emerging cellular networks, new flexible and scalable approaches for their modeling, simulation, analysis and optimization are needed. Recently, a new approach has been proposed:…

Information Theory · Computer Science 2015-06-15 Wei Lu , Marco Di Renzo

Temporal networks model how the interaction between elements in a complex system evolve over time. Just like complex systems display collective dynamics, here we interpret temporal networks as trajectories performing a collective motion in…

Social and Information Networks · Computer Science 2022-10-18 Lucas Lacasa , Jorge P. Rodriguez , Victor M. Eguiluz

We study a material modeled as a network of nodes connected by edges. Using a discrete approach, we build a nonlinear algebraic system that connects applied forces to internal forces and node positions. The model can describe elasticity,…

Optimization and Control · Mathematics 2025-10-14 Ioannis Dassios