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A model-independent or non-parametric approach for modeling a database has been widely used in cosmology. In these scenarios, the data has been used directly to reconstruct an underlying function. In this work, we introduce a novel…

Cosmology and Nongalactic Astrophysics · Physics 2023-01-19 Ahmad Mehrabi

Ribonucleic acid (RNA) is involved in many regulatory and catalytic processes in the cell. The function of any RNA molecule is intimately related with its structure. In-line probing experiments provide valuable structural datasets for a…

Biomolecules · Quantitative Biology 2017-04-19 Vojtěch Mlýnský , Giovanni Bussi

This paper describes a modification of Ehlers' model for the inelastic behavior of granular media. The modified model can be applied for describing the inelastic behavior of porous media. The key feature is a subtle change of the yield…

Soft Condensed Matter · Physics 2023-07-21 Martin Abendroth , Alexander Malik , Bjoern Kiefer

In this paper, we investigate deep inelastic and elastic scattering on a polarized spin-1/2 hadron using gauge/string duality. This spin-1/2 hadron corresponds to a supergravity mode of the dilatino. The polarized deep inelastic structure…

High Energy Physics - Phenomenology · Physics 2009-09-02 Jian-Hua Gao , Bo-Wen Xiao

Accurate prediction of protein-ligand binding structures, a task known as molecular docking is crucial for drug design but remains challenging. While deep learning has shown promise, existing methods often depend on holo-protein structures…

Biomolecules · Quantitative Biology 2024-02-22 Yufei Huang , Odin Zhang , Lirong Wu , Cheng Tan , Haitao Lin , Zhangyang Gao , Siyuan Li , Stan. Z. Li

We consider the aeroelastic simulation of flexible mechanical structures submerged in subsonic fluid flows at low Mach numbers. The nonlinear kinematics of flexible bodies are described in the total Lagrangian formulation and discretized by…

Numerical Analysis · Mathematics 2024-03-25 Jenny Schubert , Marc C. Steinbach , Christian Hente , David Märtins , Daniel Schuster

The development of efficient and robust dynamic models is fundamental in the field of systems and control engineering. In this paper, a new formulation for the dynamic model of nonlinear mechanical systems, that can be applied to different…

Systems and Control · Electrical Eng. & Systems 2026-02-09 Davide Tebaldi , Roberto Zanasi

Problems of flexible mechanical metamaterials, and highly deformable porous solids in general, are rich and complex due to nonlinear mechanics and nontrivial geometrical effects. While numeric approaches are successful, analytic tools and…

Soft Condensed Matter · Physics 2022-06-08 Yohai Bar-Sinai , Gabriele Librandi , Katia Bertoldi , Michael Moshe

This work reports a new methodology aimed at describing characteristics of protein structural shapes, and suggests a framework in which to resolve or classify automatically such structures into known families. This new approach to protein…

Quantitative Methods · Quantitative Biology 2007-05-23 Marconi Soares Barbosa , Rinaldo Wander Montalvao , Tom Blundell , Luciano da Fontoura Costa

{In this paper we propose a new impact-parameter dependent CGC/saturation model. We introduce two new features in the model that make it consistent with what we know theoretically about the deep inelastic scattering. They are: the use of…

High Energy Physics - Phenomenology · Physics 2016-02-17 Carlos Contreras , Eugene Levin , Irina Potashnikova

Electronic structure methods for accurate calculation of molecular properties have a high cost that grows steeply with the problem size, therefore, it is helpful to have the underlying atomic basis functions that are less in number but of…

Chemical Physics · Physics 2019-03-15 Dimitri N. Laikov

We study the dipole picture for the description of the deep inelastic scattering, focusing on the structure functions which are driven directly by the gluon distribution. One performs estimates using the effective dipole cross section given…

High Energy Physics - Phenomenology · Physics 2015-06-25 M. B. Gay Ducati , M. V. T. Machado

We construct a new mesoscopic model for granular media using Dynamical Density Functional Theory (DDFT). The model includes both a collision operator to incorporate inelasticity and the Helmholtz free energy functional to account for…

Statistical Mechanics · Physics 2021-04-14 B. D. Goddard , T. D. Hurst , R. Ocone

The alternative to the standard formulation of the quark-parton model is proposed. Our relativistically covariant approach is based on the solution of the master equations relating the structure and distribution functions, which…

High Energy Physics - Phenomenology · Physics 2007-05-23 P. Zavada

Structure-based drug design involves finding ligand molecules that exhibit structural and chemical complementarity to protein pockets. Deep generative methods have shown promise in proposing novel molecules from scratch (de-novo design),…

Quantitative Methods · Quantitative Biology 2021-11-09 Pavol Drotár , Arian Rokkum Jamasb , Ben Day , Cătălina Cangea , Pietro Liò

A statistical model for the parton distributions in the nucleon has proven its efficiency in the analysis of deep inelastic scattering data, so we propose to extend this approach to the description of unpolarized fragmentation functions for…

High Energy Physics - Phenomenology · Physics 2009-11-10 Claude Bourrely , Jacques Soffer

The pole extrapolation method is applied to the semi-inclusive inelastic electron scattering off the deuteron with tagged spectator protons to extract the high-x structure function of the neutron. This approach is based on the extrapolation…

High Energy Physics - Phenomenology · Physics 2016-06-10 Wim Cosyn , Misak M. Sargsian

We present a detailed analysis of the uncertainty in the neutron F2n structure function extracted from inclusive deuteron and proton deep-inelastic scattering data. The analysis includes experimental uncertainties as well as uncertainties…

High Energy Physics - Phenomenology · Physics 2013-05-30 J. Arrington , J. G. Rubin , W. Melnitchouk

Recent experiments have shown that various structures may be formed during the evaporative dewetting of thin films of colloidal suspensions. Nano-particle deposits of strongly branched `flower-like', labyrinthine and network structures are…

Soft Condensed Matter · Physics 2011-10-03 M. J. Robbins , A. J. Archer , U. Thiele

We compute diffractive structure functions for both protons and nuclei in the framework of Color Glass Condensate models with impact parameter dependence. These models have previously been shown to provide good agreement with inclusive F_2…

High Energy Physics - Phenomenology · Physics 2009-01-14 H. Kowalski , T. Lappi , C. Marquet , R. Venugopalan