Related papers: Parallelizing the MARS15 Code with MPI for Shieldi…
A parallel code has been written in FORTRAN90, C, and MPI for the analysis of biological simulation data. Using a master/slave algorithm, the software operates on AMBER generated trajectory data using either UNIX or MPI file IO, and it…
Researchers working on the automatic parallelization of programs have long known that too much parallelism can be even worse for performance than too little, because spawning a task to be run on another CPU incurs overheads.…
The paper demonstrates the optimization of the execution environment of a hybrid OpenMP+MPI computational fluid dynamics code (shallow water equation solver) on a cluster enabled with Intel Xeon Phi coprocessors. The discussion includes:…
Financial institutions have massive computations to carry out overnight which are very demanding in terms of the consumed CPU. The challenge is to price many different products on a cluster-like architecture. We have used the Premia…
We discuss the computational bottlenecks in molecular dynamics (MD) and describe the challenges in parallelizing the computation intensive tasks. We present a hybrid algorithm using MPI (Message Passing Interface) with OpenMP threads for…
We present our experience with the modernization on the GR-MHD code BHAC, aimed at improving its novel hybrid (MPI+OpenMP) parallelization scheme. In doing so, we showcase the use of performance profiling tools usable on x86 (Intel-based)…
Neural network (NN) accelerators with multi-chip-module (MCM) architectures enable integration of massive computation capability; however, they face challenges of computing resource underutilization and off-chip communication overheads.…
Numerical studies of shock waves in large scale systems via kinetic simulations with millions of particles are too computationally demanding to be processed in serial. In this work we focus on optimizing the parallel performance of a…
Cosmological simulations of structures and galaxies formations have played a fundamental role in the study of the origin, formation and evolution of the Universe. These studies improved enormously with the use of supercomputers and parallel…
Particle-in-Cell (PIC) Monte Carlo (MC) simulations are central to plasma physics but face increasing challenges on heterogeneous HPC systems due to excessive data movement, synchronization overheads, and inefficient utilization of multiple…
This paper presents the research work on multicore microcontrollers using parallel, and time critical programming for the embedded systems. Due to the high complexity and limitations, it is very hard to work on the application development…
Asynchronous programming models (APM) are gaining more and more traction, allowing applications to expose the available concurrency to a runtime system tasked with coordinating the execution. While MPI has long provided support for…
This study presents scaling results and a performance analysis across different supercomputers and compilers for the Met Office weather and climate model, LFRic. The model is shown to scale to large numbers of nodes which meets the design…
MPI has been ubiquitously deployed in flagship HPC systems aiming to accelerate distributed scientific applications running on tens of hundreds of processes and compute nodes. Maintaining the correctness and integrity of MPI application…
With Geant4 Version 10.0, released in December 2013, one of the most widely used Monte-Carlo codes has been ported to take full advantage of multi- and many-core CPUs thanks to the introduction of event-level parallelism via multithreading.…
Polar codes are a class of linear block codes that provably achieves channel capacity. They have been selected as a coding scheme for the control channel of enhanced mobile broadband (eMBB) scenario for $5^{\text{th}}$ generation wireless…
Low Density Parity Check (LDPC) codes are linear error correcting codes used in communication systems for Forward Error Correction (FEC). But, intensive computation is required for encoding and decoding of LDPC codes, making it difficult…
In order for High-Performance Computing (HPC) applications with data security requirements to execute in the public cloud, the cloud infrastructure must ensure the privacy and integrity of data. To meet this goal, we consider incorporating…
A Monte-Carlo study of several Mu2e Production Solenoid (PS) absorber (heat shield) versions using the MARS15 code has been performed. Optimizations for material as well as cost (amount of tungsten) have been carried out. Studied are such…
Bandwidth-starved multicore chips have become ubiquitous. It is well known that the performance of stencil codes can be improved by temporal blocking, lessening the pressure on the memory interface. We introduce a new pipelined approach…