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The description of surface-diffusion controlled dynamics via the phase-field method is less trivial than it appears at first sight. A seemingly straightforward approach from the literature is shown to fail to produce the correct…

Computational Physics · Physics 2017-03-13 Clemens Mueller-Gugenberger , Robert Spatschek , Klaus Kassner

In this paper we consider flat metrics (semi-translation structures) on surfaces of finite type. There are two main results. The first is a complete description of when a set of simple closed curves is spectrally rigid, that is, when the…

Geometric Topology · Mathematics 2015-05-13 Moon Duchin , Christopher J. Leininger , Kasra Rafi

We analyze a restricted SOS model on a square lattice with nearest and next-nearest neighbor interactions, using Monte Carlo techniques. In particular, the critical exponents at the preroughening transition between the flat and disordered…

Statistical Mechanics · Physics 2007-05-23 J. Klaers , W. Selke

We report a numerical simulation for the phase diagram of a simple two dimensional model, similar to one proposed by Noro and Frenkel [J. Chem. Phys. \textbf{114}, 2477 (2001)] for membrane proteins, but one that includes the role of the…

Soft Condensed Matter · Physics 2009-11-11 D. L. Pagan , A. Shiryayev , T. P. Connor , J. D. Gunton

A model of multicellular systems with several types of cells is developed from the phase field model. The model is presented as a set of partial differential equations of the field variables, each of which expresses the shape of one cell.…

Biological Physics · Physics 2015-05-30 Makiko Nonomura

We discuss the results of a study of restricted solid-on-solid models for fcc (110) surfaces. These models are simple modifications of the exactly solvable BCSOS model, and are able to describe a $(2\times 1)$ missing-row reconstructed…

Condensed Matter · Physics 2009-10-28 G. Santoro , M. Vendruscolo , S. Prestipino , E. Tosatti

Time-discrete dynamical systems on a finite state space have been used with great success to model natural and engineered systems such as biological networks, social networks, and engineered control systems. They have the advantage of being…

Combinatorics · Mathematics 2015-03-17 Alan Veliz-Cuba , Reinhard Laubenbacher

We study the Muskat problem on the half-plane, which models motion of an interface between two fluids of distinct densities (e.g., oil and water) in a porous medium (e.g., an aquifer) that sits atop an impermeable layer (e.g., bedrock).…

Analysis of PDEs · Mathematics 2024-10-17 Andrej Zlatos

We set up the statistical mechanics for a nearly flat, thermally equilibrated fluid membrane, attached to an elastic network through one of its sides. We predict that the resulting structural (inversion) asymmetry of the membrane, notably…

Soft Condensed Matter · Physics 2016-10-07 Tirthankar Banerjee , Niladri Sarkar , Abhik Basu

We address the problem of "phantom" folding of the tethered membrane modelled by the two-dimensional square lattice, with bonds on the edges and diagonals of each face. Introducing bending rigidities $K_1$ and $K_2$ for respectively long…

Condensed Matter · Physics 2009-10-31 P. Di Francesco

We report a numerical simulation of the phase diagram of a simple model for membrane proteins constrained to move in a plane. In analogy with the corresponding three dimensional models, the liquid-gas transition becomes metastable as the…

Soft Condensed Matter · Physics 2009-10-31 Massimo G. Noro , Daan Frenkel

How can dense biological tissue maintain sharp boundaries between coexisting cell populations? We explore this question within a simple vertex model for cells, focusing on the role of topology and tissue surface tension. We show that the…

Soft Condensed Matter · Physics 2018-02-07 Daniel M. Sussman , J. M. Schwarz , M. Cristina Marchetti , M. Lisa Manning

In this work, we present a computational formulation based on continuum mechanics to study the interaction of fluid membranes embedded with semiflexible filaments. This is motivated by systems in membrane biology, such as cytoskeletal…

Numerical Analysis · Mathematics 2023-12-21 Basant Lal Sharma , Luigi E. Perotti , Sanjay Dharmavaram

One of the major problems in the theory of the porous medium equation is the regularity of the solutions and the free boundaries. Here we assume flatness of the solution in space time cylinder and derive smoothness of the interface after a…

Analysis of PDEs · Mathematics 2016-09-29 Clemens Kienzler , Herbert Koch , Juan Luis Vazquez

We describe a phase transition that gives rise to structurally non-trivial states in a two-dimensional ordered network of particles connected by harmonic bonds. Monte Carlo simulations reveal that the network supports, apart from the…

Soft Condensed Matter · Physics 2017-04-05 Saswati Ganguly , Jürgen Horbach , Peter Sollich , Parswa Nath , Smarajit Karmakar , Surajit Sengupta

We discuss the flatness property of some fiber type contractions of complex smooth projective varieties of arbitrary dimensions. We relate the flatness of some morphisms having one-dimensional fibers with their conic bundles structures,…

Algebraic Geometry · Mathematics 2019-06-27 Eleonora Anna Romano

In multicomponent membranes, internal scalar fields may couple to membrane curvature, thus renormalizing the membrane elastic constants and destabilizing the flat membranes. Here, a general elasticity theory of membranes is considered that…

Soft Condensed Matter · Physics 2018-03-07 S. Alex Rautu

We consider a mixture of one neutral and two oppositely charged types of molecules confined to a surface. Using analytical techniques and molecular dynamics simulations, we construct the phase diagram of the system and exhibit the…

Soft Condensed Matter · Physics 2009-11-11 Sharon M. Loverde , Francisco Solis , Monica Olvera de la Cruz

Interactions mediated by the cell membrane between inclusions, such as membrane proteins or antimicrobial peptides, play important roles in their biological activity. They also constitute a fascinating challenge for physicists, since they…

Biological Physics · Physics 2019-03-15 Anne-Florence Bitbol , Doru Constantin , Jean-Baptiste Fournier

The unbinding properties of an interface near structured wedges are investigated by discrete models with short range interactions. The calculations demonstrate that interface unbinding take place in two stages: $i$) a continuous…

Statistical Mechanics · Physics 2009-11-11 Gilberto Giugliarelli