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We experiment with a massively parallel implementation of an algorithm for simulating the dynamics of metastable decay in kinetic Ising models. The parallel scheme is directly applicable to a wide range of stochastic cellular automata where…

Statistical Mechanics · Physics 2009-10-31 G. Korniss , M. A. Novotny , P. A. Rikvold

The physics of crystalline membranes, i.e. fixed-connectivity surfaces embedded in three dimensions and with an extrinsic curvature term, is very rich and of great theoretical interest. To understand their behavior, numerical simulations…

Computational Physics · Physics 2009-10-30 G. Thorleifsson , M. Falcioni

Population annealing is a promising recent approach for Monte Carlo simulations in statistical physics, in particular for the simulation of systems with complex free-energy landscapes. It is a hybrid method, combining importance sampling…

Computational Physics · Physics 2017-09-14 Lev Yu. Barash , Martin Weigel , Michal Borovský , Wolfhard Janke , Lev N. Shchur

We present an efficient and exact Monte Carlo algorithm to simulate reversible aggregation of particles with dedicated binding sites. This method introduces a novel data structure of dynamic bond tree to record clusters and sequences of…

Quantitative Methods · Quantitative Biology 2011-09-27 Qiang Chang , Jin Yang

A large-scale parallel loop cluster quantum Monte Carlo simulation is presented. On 24,576 nodes of the K computer, one loop cluster Monte Carlo update of the world-line configuration of the $S=1/2$ antiferromagnetic Heisenberg chain with…

Strongly Correlated Electrons · Physics 2019-06-26 Synge Todo , Haruhiko Matsuo , Hideyuki Shitara

This paper describes an algorithm for selecting parameter values (e.g. temperature values) at which to measure equilibrium properties with Parallel Tempering Monte Carlo simulation. Simple approaches to choosing parameter values can lead to…

Other Condensed Matter · Physics 2015-05-18 Firas Hamze , Neil Dickson , Kamran Karimi

As it has become common to use many computer cores in routine applications, finding good ways to parallelize popular algorithms has become increasingly important. In this paper, we present a parallelization scheme for Markov chain Monte…

Methodology · Statistics 2016-06-01 Guillaume W. Basse , Natesh S. Pillai , Aaron Smith

Co-clustering simultaneously clusters rows and columns, revealing more fine-grained groups. However, existing co-clustering methods suffer from poor scalability and cannot handle large-scale data. This paper presents a novel and scalable…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-03-20 Zihan Wu , Zhaoke Huang , Hong Yan

We propose a new quantum Monte Carlo algorithm which realizes a relaxation intrinsic to the original quantum system. The Monte Carlo dynamics satisfies the dynamic scaling relation $\tau\sim \xi^z$ and is independent of the Trotter number.…

Statistical Mechanics · Physics 2009-11-10 Tota Nakamura , Yoshiyuki Ito

We simulate single and multiple Ising models coupled to 2-d gravity using both the Swendsen-Wang and Wolff algorithms to update the spins. We study the integrated autocorrelation time and find that there is considerable critical slowing…

High Energy Physics - Lattice · Physics 2009-10-22 M. Bowick , M. Falcioni , G. Harris , E. Marinari

We present cluster Monte Carlo algorithms for the $XYZ$ quantum spin models. In the special case of $S=1/2$, the new algorithm can be viewed as a cluster algorithm for the 8-vertex model. As an example, we study the $S=1/2$ $XY$ model in…

Condensed Matter · Physics 2009-10-28 N. Kawashima

We discuss the development of cluster algorithms from the viewpoint of probability theory and not from the usual viewpoint of a particular model. By using the perspective of probability theory, we detail the nature of a cluster algorithm,…

Condensed Matter · Physics 2009-10-22 N. Kawashima , J. E. Gubernatis

We apply extensive Monte Carlo simulations to study the probability distribution $P(m)$ of the order parameter $m$ for the simple cubic Ising model with periodic boundary condition at the transition point. Sampling is performed with the…

Computational Physics · Physics 2020-03-18 Jiahao Xu , Alan M. Ferrenberg , David P. Landau

We present and apply a general-purpose, multi-start algorithm for improving the performance of low-energy samplers used for solving optimization problems. The algorithm iteratively fixes the value of a large portion of the variables to…

Discrete Mathematics · Computer Science 2017-11-02 Hamed Karimi , Gili Rosenberg , Helmut G. Katzgraber

Monte Carlo simulations of the Ising model play an important role in the field of computational statistical physics, and they have revealed many properties of the model over the past few decades. However, the effect of frustration due to…

Disordered Systems and Neural Networks · Physics 2017-01-04 Ye Fang , Sheng Feng , Ka-Ming Tam , Zhifeng Yun , Juana Moreno , J. Ramanujam , Mark Jarrell

We investigate the applicability of the synchronous relaxation (SR) algorithm to parallel kinetic Monte Carlo simulations of simple models of thin-film growth. A variety of techniques for optimizing the parallel efficiency are also…

Materials Science · Physics 2007-05-23 Yunsic Shim , Jacques G. Amar

The computational complexity of internal diffusion-limited aggregation (DLA) is examined from both a theoretical and a practical point of view. We show that for two or more dimensions, the problem of predicting the cluster from a given set…

Condensed Matter · Physics 2007-05-23 Cristopher Moore , Jonathan Machta

We present a new Monte Carlo algorithm that allows the simultaneous determination of a few extremal eigenpairs of a very large matrix. It extends the power method and uses a new sampling method, the sewing method, that does a large state…

Statistical Mechanics · Physics 2008-07-09 T. E. Booth , J. E. Gubernatis

One of the challenges of high granularity calorimeters, such as that to be built to cover the endcap region in the CMS Phase-2 Upgrade for HL-LHC, is that the large number of channels causes a surge in the computing load when clustering…

Instrumentation and Detectors · Physics 2020-01-29 Marco Rovere , Ziheng Chen , Antonio Di Pilato , Felice Pantaleo , Chris Seez

An efficient Monte Carlo algorithm for the simulation of spin models with long-range interactions is discussed. Its central feature is that the number of operations required to flip a spin is independent of the number of interactions…

Statistical Mechanics · Physics 2007-05-23 Erik Luijten