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We investigate the internal structure of a polymer during collapse from an expanded coil to a compact globule. Collapse is more probable in local regions of high curvature, so a smoothing of the fractal polymer structure occurs that…

Soft Condensed Matter · Physics 2008-11-07 G. E. Crooks , B. Ostrovsky , Y. Bar-Yam

The phase behavior of colloidal particles embedded in a binary fluid is influenced by wetting layers surrounding each particle. The free energy of the fluid film depends on its morphology, i.e., on size, shape and connectivity. Under rather…

Soft Condensed Matter · Physics 2007-05-23 Uwe Brodatzki , Klaus Mecke

Tissue fluidity regulates many critical biological processes, including embryonic development, wound healing, and cancer metastasis. In confluent epithelia, where cell packing fraction is effectively fixed, the prevailing paradigm…

Biological Physics · Physics 2026-03-09 Pradip K. Bera , Anh Q. Nguyen , Molly McCord , Dapeng Bi , Jacob Notbohm

Non-Newtonian fluids have a viscosity that varies with applied stress. Elastoviscoplastic fluids, the elastic, viscous and plastic properties of which are interconnected in a non-trivial way, belong to this category. We have performed…

Fluid Dynamics · Physics 2023-08-02 Mohamed S. Abdelgawad , Ianto Cannon , Marco E. Rosti

We present a Monte Carlo study of external surface anchoring in nematic cells with partially disordered solid substrates, as well as of intrinsic anchoring at free nematic interfaces. The simulations are based on the simple hexagonal…

Soft Condensed Matter · Physics 2009-11-07 N. V. Priezjev , G. Skacej , R. A. Pelcovits , S. Zumer

Many vesicles have a spherical resting shape and exposure to fluid flows induces an exchange between sub-optical area and visible (systematic) deformation, while the total area is conserved. The dynamics which controls the exchange between…

Soft Condensed Matter · Physics 2020-06-19 Afsoun Rahnama Falavarjani , David Salac

Many engineering and physiological applications deal with situations when a fluid is moving in flexible tubes with elastic walls. In the real-life applications like blood flow, there is often an additional complexity of vorticity being…

Fluid Dynamics · Physics 2024-09-09 Rossen Ivanov , Vakhtang Putkaradze

We employ the phospholipid bilayer membranes of giant unilamellar vesicles as a free-standing environment for the growth of membrane-integrated ultrathin phospholipid crystals possessing a variety of shapes with 6-fold symmetry. Crystal…

Soft Condensed Matter · Physics 2024-07-09 Hao Wan , Geunwoong Jeon , Gregory M. Grason , Maria M. Santore

Convection of an internally heated fluid, confined between top and bottom plates of equal temperature, is studied by direct numerical simulation in two and three dimensions. The unstably stratified upper region drives convection that…

Fluid Dynamics · Physics 2016-06-30 David Goluskin , Erwin P. van der Poel

We analyze the behavior of a suspension of active polar particles under shear. In the absence of external forces, orientationally ordered active particles are known to exhibit a transition to a state of non-uniform polarization and…

Soft Condensed Matter · Physics 2010-05-07 Luca Giomi , M. Cristina Marchetti , Tanniemola B. Liverpool

We simulate structural phase behavior of polymer-grafted colloidal particles by molecular Monte Carlo technique. Interparticle potential, which has a finite repulsive square-step outside a rigid core of the colloid, was previously confirmed…

Soft Condensed Matter · Physics 2015-03-19 Yuki Norizoe , Toshihiro Kawakatsu

The biological function of membranes is closely related to their softness, which is often studied through the membranes' thermally-driven fluctuations. The analysis commonly assumes that the relaxation rate of a pure bending deformation is…

Soft Condensed Matter · Physics 2024-07-09 Hammad A. Faizi , Rony Granek , Petia M. Vlahovska

Some highly unusual features of a lipid-water liquid crystal are revealed by high pressure x-ray diffraction, light scattering and dilatometric studies of the lamellar (bilayer $L_{\alpha}$) to nonlamellar inverse hexagonal ($H_{II}$) phase…

Condensed Matter · Physics 2009-10-22 P. T. C. So , Sol M. Gruner , Shyamsunder Erramilli

The mean area of two-dimensional unpressurised vesicles, or self-avoiding loops of fixed length $N$, behaves for large $N$ as $A_0 N^{3/2}$, while their mean square radius of gyration behaves as $R^2_0 N^{3/2}$. The amplitude ratio…

Condensed Matter · Physics 2009-10-22 John Cardy

In active matter systems, deformable boundaries provide a mechanism to organize internal active stresses and perform work on the external environment. To study a minimal model of such a system, we perform particle-based simulations of an…

Soft Condensed Matter · Physics 2022-01-05 Matthew S. E. Peterson , Aparna Baskaran , Michael F. Hagan

We investigate the swim pressure exerted by non-chiral and chiral active particles on convex or concave circular boundaries. Active particles are modeled as non-interacting and non-aligning self-propelled Brownian particles. The convex and…

Soft Condensed Matter · Physics 2020-10-01 Tayeb Jamali , Ali Naji

We conduct a systematic exploration of the energy landscape of vesicle morphologies within the framework of the Helfrich model. Vesicle shapes are determined by minimizing the elastic energy subject to constraints of constant area and…

Soft Condensed Matter · Physics 2023-11-27 Rodrigo B. Reboucas , Hammad A. Faizi , Michael J. Miksis , Petia M. Vlahovska

Vortices, phase singularities, and topological defects of any kind often reflect information that is crucial for understanding physical systems in which such entities arise. With near-field experiments supported by numerical calculations,…

Optics · Physics 2018-07-04 L. De Angelis , L. Kuipers

We use high resolution numerical simulations over several hundred of turnover times to study the influence of small scale dissipation onto vortex statistics in 2D decaying turbulence. A self-similar scaling regime is detected when the…

Statistical Mechanics · Physics 2009-10-31 Jean-Philippe Laval , Pierre-Henri Chavanis , Bérengère Dubrulle , Clément Sire

By means of sophisticated Monte Carlo methods, we investigate the conformational phase diagram of a simple model for flexible polymers with explicit thickness. The thickness constraint, which is introduced geometrically via the global…

Soft Condensed Matter · Physics 2009-02-06 Thomas Vogel , Thomas Neuhaus , Michael Bachmann , Wolfhard Janke
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