Related papers: Partial-Global Stochastic Metropolis Update for Dy…
We discuss several methods that improve the partial-global stochastic Metropolis (PGSM) algorithm for smeared link staggered fermions. We present autocorrelation time measurements and argue that this update is feasible even on reasonably…
Smearing the gauge links of dynamical configurations removes small scale unphysical vacuum fluctuations and thus improves the chiral properties of lattice fermions. Recently we proposed the hypercubic smearing (HYP) that improves the flavor…
Smearing the gauge links of dynamical configurations removes small scale unphysical vacuum fluctuations und thus improves the chiral properties of lattice fermions. We present a new algorithm for the simulation of dynamical fermions coupled…
Staggered fermions with smeared links can have greatly improved chiral properties. In a recent paper we introduced a simple and effective method to simulate four flavors of staggered smeared link fermions. In this work we extend the four…
Smeared link fermionic actions can be straightforwardly simulated with partial-global updating. The efficiency of this simulation is greatly increased if the fermionic matrix is written as a product of several near-identical terms. Such a…
One of the most serious problems of the staggered fermion lattice action is flavor symmetry violation. Smeared link staggered fermions can improve flavor symmetry by an order of magnitude relative to the standard thin link action. Over the…
We present and test a new method for simulating dynamical fermions with fat links. Our construction is based on the introduction of auxiliary but dynamical gauge fields and works with any fermionic action and can be combined with any…
We extend our previous study of taste-symmetry breaking using HYP-smeared staggered fermions in two ways. First, we improve the statistics of a comparison of unimproved and HYP-smeared staggered fermions on quenched lattices with $a\approx…
We present results from simulations of two dynamical flavors of improved Wilson fermions with nHYP smeared gauge links. We demonstrate that the simulation is stable at a pseudo-scalar mass of 360MeV, a 2.1fm box and a lattice spacing of…
We study the finite temperature phase transition of four and two flavor staggered fermions with hypercubic smeared link actions. These preliminary studies suggest that the improved flavor symmetry of the fermionic action can have a…
We propose and study an improved method to calculate the fermionic determinant of dynamical configurations. The evaluation or at least stochastic estimation of ratios of fermionic determinants is essential for a recently proposed updating…
We introduce a new smearing transformation, the hypercubic (HYP) fat link. The hypercubic fat link mixes gauge links within hypercubes attached to the original link only. Using quenched lattices at beta = 5.7 and 6.0 we show that HYP fat…
We propose an algorithm for simulating stochastic relativistic fluid dynamics based on Metropolis updates. Each step of the algorithm begins with an update based on ideal hydrodynamics. This is followed by proposing random (spatial)…
We propose a new kernel for Metropolis Hastings called Directional Metropolis Hastings (DMH) with multivariate update where the proposal kernel has state dependent covariance matrix. We use the derivative of the target distribution at the…
The challenging problem of conducting fully Bayesian inference for the reaction rate constants governing stochastic kinetic models (SKMs) is considered. Given the challenges underlying this problem, the Markov jump process representation is…
The Metropolis-Hastings algorithm is a fundamental Markov chain Monte Carlo (MCMC) method for sampling and inference. With the advent of Big Data, distributed and parallel variants of MCMC methods are attracting increased attention. In this…
We describe an implementation of the Rational Hybrid Monte Carlo (RHMC) algorithm for dynamical computations with two flavours of staggered quarks. We discuss several variants of the method, the performance and possible sources of error for…
We propose a new method for Hybrid Monte Carlo (HMC) simulations with odd numbers of dynamical fermions on the lattice. It employs a different approach from polynomial or rational HMC. In this method, gamma-five hermiticity of the lattice…
The ability to generate samples of the random effects from their conditional distributions is fundamental for inference in mixed effects models. Random walk Metropolis is widely used to perform such sampling, but this method is known to…
A new version of the two-step multi-boson algorithm is developed with different fermion actions in the multi-boson and noisy Metropolis steps.