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We analyze the dynamics of an algorithm for approximate inference with large Gaussian latent variable models in a student-teacher scenario. To model nontrivial dependencies between the latent variables, we assume random covariance matrices…

Machine Learning · Computer Science 2020-08-26 Burak Çakmak , Manfred Opper

A stochastic configuration interaction method based on evolutionary algorithm is designed as an affordable approximation to full configuration interaction (FCI). The algorithm comprises of initiation, propagation and termination steps,…

Strongly Correlated Electrons · Physics 2016-08-18 Rahul Chakraborty , Debashree Ghosh

We study dynamic algorithms for maintaining fundamental algebraic properties of matrices, specifically, rank, basis, and full-rank submatrices, with applications to maximum matching on dynamic graphs. Prior dynamic algorithms for rank…

Data Structures and Algorithms · Computer Science 2026-05-12 Jan van den Brand , Vishal Kumar , Daniel J. Zhang

Heterogeneous treatment effect estimation in high-stakes applications demands models that simultaneously optimize precision, interpretability, and calibration. Many existing tree-based causal inference techniques, however, exhibit high…

Machine Learning · Computer Science 2025-04-21 Yichen Liu

We analyze the cut-off dependence of the fermion contribution to the finite temperature free energy density in ${\cal O}(g^2)$ lattice perturbation theory for several improved staggered fermion actions. Cut-off effects are drastically…

High Energy Physics - Lattice · Physics 2010-11-19 U. M. Heller , F. Karsch , B. Sturm

Side chain flexibility is an important factor in ligand binding. In order to determine the extent to which side chain flexibility is involved in ligand binding, a knowledge-based approach was taken. A database composed of examples of…

Biomolecules · Quantitative Biology 2013-01-22 Rafael Najmanovich

For many machine learning algorithms, predictive performance is critically affected by the hyperparameter values used to train them. However, tuning these hyperparameters can come at a high computational cost, especially on larger datasets,…

The effect of adjusting damping factor {\alpha}, from a small initial value {\alpha}0 to the final desired {\alpha}f value, upon then iterations needed for PageRank computation is observed. Adjustment of the damping factor is done in one or…

Discrete Mathematics · Computer Science 2021-08-10 Subhajit Sahu , Kishore Kothapalli , Dip Sankar Banerjee

Stochastic methods offer an effective way to suppress coherent errors in quantum simulation. In particular, the randomized compilation protocol may reduce circuit depth by randomly sampling Hamiltonian terms rather than following the…

Quantum Physics · Physics 2026-05-15 Yu-Xia Wu , Yun-Zhuo Fan , Dan-Bo Zhang

The discerning behavior of living systems relies on accurate interactions selected from the lot of molecular collisions occurring in the cell. To ensure the reliability of interactions, binding partners are classically envisioned as finely…

Molecular Networks · Quantitative Biology 2016-09-28 Denis Michel , Benjamin Boutin , Philippe Ruelle

We consider recent progress in algorithms for generating gauge field configurations that include the dynamical effects of light fermions. We survey what has been achieved in recent state-of-the-art computations, and examine the trade-offs…

High Energy Physics - Lattice · Physics 2009-11-10 A. D. Kennedy

We discuss the lattice formulation of gauge theories with fermions in arbitrary representations of the color group, and present in detail the implementation of the HMC/RHMC algorithm for simulating dynamical fermions. We discuss the…

High Energy Physics - Lattice · Physics 2014-11-18 Luigi Del Debbio , Agostino Patella , Claudio Pica

Recent results on QCD thermodynamics are presented. The nature of the T>0 transition is determined, which turns out to be an analytic cross-over. The absolute scale for this transition is calculated. The temperature dependent static…

High Energy Physics - Lattice · Physics 2009-04-14 Z. Fodor

Bridging the sim-to-real gap remains a fundamental challenge in robotics, as accurate dynamic parameter estimation is essential for reliable model-based control, realistic simulation, and safe deployment of manipulators. Traditional…

Robotics · Computer Science 2025-12-10 Mohammed Elseiagy , Tsige Tadesse Alemayoh , Ranulfo Bezerra , Shotaro Kojima , Kazunori Ohno

In this paper, a new fractional step method is proposed for simulating stiff and nonstiff chemically reacting flows. In stiff cases, a well-known spurious numerical phenomenon, i.e. the incorrect propagation speed of discontinuities, may be…

Computational Physics · Physics 2019-05-01 Jian-Hang Wang , Shucheng Pan , Xiangyu Y. Hu , Nikolaus A. Adams

The class of $\alpha$-stable distributions is widely used in various applications, especially for modelling heavy-tailed data. Although the $\alpha$-stable distributions have been used in practice for many years, new methods for…

Methodology · Statistics 2022-12-29 Kewin Pączek , Damian Jelito , Marcin Pitera , Agnieszka Wyłomańska

We present a new dynamical approach for measuring the temperature of a Hamiltonian dynamical system in the micro canonical ensemble of thermodynamics. We show that under the hypothesis of ergodicity the temperature can be computed as a…

chao-dyn · Physics 2009-10-30 Hans Henrik Rugh

In domains where users tend to develop long-term preferences that do not change too frequently, the stability of recommendations is an important factor of the perceived quality of a recommender system. In such cases, unstable…

Information Retrieval · Computer Science 2021-04-13 Oluwafemi Olaleke , Ivan Oseledets , Evgeny Frolov

We investigate an alternative to the Sequential Propagator Method used in Lattice QCD calculations of semileptonic form factors. We replace the sequential propagator with a stochastic propagator so that, in principle, all momentum and sink…

High Energy Physics - Lattice · Physics 2010-11-05 Richard Evans , Gunnar Bali , Sara Collins

We investigate the potential of numerical algorithms to decipher the kinetic parameters involved in multi-step chemical reactions. To this end we study a dimerization kinetics of protein as a model system. We follow the dimerization…

Biological Physics · Physics 2014-12-24 Srijeeta Talukder , Shrabani Sen , Ralf Metzler , Suman K Banik , Pinaki Chaudhury