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Massive Multi-Omics Microbiome Database (M3DB) is a data warehousing and analytics solution designed to handle diverse, complex, and unprecedented volumes of sequence and taxonomic classification data obtained in a typical microbiome…

Other Quantitative Biology · Quantitative Biology 2015-12-14 Shaun W. Norris , Steven P. Bradley , Hardik I. Parikh , Nihar U. Sheth

This paper presents a simple data dump and load utility for Firebird databases which mimics mysqldump in MySQL. This utility, fb_dump and fb_load, for dumping and loading respectively, retrieves each database table using kinterbasdb and…

Databases · Computer Science 2007-05-23 Maurice HT Ling

How to manage various data in a unified way is a significant research topic in the field of databases. To address this problem, researchers have proposed multi-model databases to support multiple data models in a uniform platform with a…

Databases · Computer Science 2021-09-02 Gongsheng Yuan , Jiaheng Lu , Shuxun Zhang , Zhengtong Yan

The configuration database is one of the vital systems in the BaBar on-line system. It provides services for the different parts of the data acquisition system and control system, which require run-time parameters. The original design and…

Databases · Computer Science 2007-05-23 R. Bartoldus , G. Dubois-Felsmann , Y. Kolomensky , A. Salnikov

Recommender systems play an essential role in the modern business world. They recommend favorable items like books, movies, and search queries to users based on their past preferences. Applying similar ideas and techniques to Monte Carlo…

Strongly Correlated Electrons · Physics 2017-04-05 Li Huang , Yi-feng Yang , Lei Wang

We have created a cloud-based service that allows the end users to run tests on multiple different databases to find which databases are most suitable for their project. From our research, we could not find another application that enables…

Databases · Computer Science 2017-05-24 Omar Almootassem , Syed Hamza Husain , Denesh Parthipan , Qusay H. Mahmoud

This paper presents the application of a meta model and single underlying model on an applied avionics system design use case. System models, safety assurance cases and safety requirements are maintained in a central repository. This…

Software Engineering · Computer Science 2021-06-03 Jef Stegen , Stefan Dutre , Joe Zhensheng Guo , Marc Zeller , Stefan Rothbauer

Monte Carlo computer simulations are virtually the only way to analyze the thermodynamic behavior of a system in a precise way. However, the various existing methods exhibit extreme differences in their efficiency, depending on model…

Statistical Mechanics · Physics 2011-07-05 Michael Bachmann

Computer simulations are an essential pillar of knowledge generation in science. Exploring, understanding, reproducing, and sharing the results of simulations relies on tracking and organizing the metadata describing the numerical…

Information Retrieval · Computer Science 2025-06-13 José Villamar , Matthias Kelbling , Heather L. More , Michael Denker , Tom Tetzlaff , Johanna Senk , Stephan Thober

SciDB is a scalable, computational database management system that uses an array model for data storage. The array data model of SciDB makes it ideally suited for storing and managing large amounts of imaging data. SciDB is designed to…

In modern computing, RDBMS are great to store different types of data. To a developer, one of the major objectives is to provide a very low cost and easy to use solution to an existing problem. While commercial databases are more easy to…

Databases · Computer Science 2015-03-19 Kisor Ray , Sourav Bag , Saumen Sarkar

Reproducibility of research is essential for science. However, in the way modern computational biology research is done, it is easy to lose track of small, but extremely critical, details. Key details, such as the specific version of a…

Monte Carlo event generators are central to high-energy physics analysis. However, workflows based on handwritten scripts can be difficult to reuse, modify, and reproduce when multiple Monte Carlo models, tune variations, run variations,…

High Energy Physics - Phenomenology · Physics 2026-05-19 Rishabh Gupta , Kangkan Goswami , Suraj Prasad , Raghunath Sahoo

Distributed software systems that are designed to run over workstation machines within organisations are termed workstation-based. Workstation-based systems are characterised by dynamically changing sets of machines that are used primarily…

Databases · Computer Science 2012-07-23 Angus Macdonald

Production Machine Learning involves continuous training: hosting multiple versions of models over time, often with many model versions running at once. When model performance does not meet expectations, Machine Learning Engineers (MLEs)…

Software Engineering · Computer Science 2024-10-24 Rolando Garcia , Anusha Dandamudi , Gabriel Matute , Lehan Wan , Joseph Gonzalez , Joseph M. Hellerstein , Koushik Sen

Large language models (LLMs) are emerging as few-shot learners capable of handling a variety of tasks, including comprehension, planning, reasoning, question answering, arithmetic calculations, and more. At the core of these capabilities is…

Databases · Computer Science 2024-11-05 Yu Pan , Hongfeng Yu , Tianjiao Zhao , Jianxin Sun

In the CMS experiment, the non event data needed to set up the detector, or being produced by it, and needed to calibrate the physical responses of the detector itself are stored in ORACLE databases. The large amount of data to be stored,…

Instrumentation and Detectors · Physics 2015-05-14 M. De Gruttola , S. Di Guida , D. Futyan , F. Glege , G. Govi , V. Innocente , P. Paolucci , P. Picca , A. Pierro , D. Schlatter , Z. Xie

Background: Monte Carlo simulations of diffusion are commonly used as a model validation tool as they are especially suitable for generating the diffusion MRI signal in complicated tissue microgeometries. New method: Here we describe the…

Medical Physics · Physics 2021-04-13 Hong-Hsi Lee , Els Fieremans , Dmitry S Novikov

Knowledge graphs represented as RDF datasets are integral to many machine learning applications. RDF is supported by a rich ecosystem of data management systems and tools, most notably RDF database systems that provide a SPARQL query…

Databases · Computer Science 2021-09-07 Aisha Mohamed , Ghadeer Abuoda , Abdurrahman Ghanem , Zoi Kaoudi , Ashraf Aboulnaga

Since the middle of the 1940's scientists have used Monte Carlo (MC) simulations to obtain information about physical processes. This has proved a accurate and and reliable method to obtain this information. Through out resent years…

Astrophysics of Galaxies · Physics 2012-07-02 Thomas Amby Ottosen