Related papers: A hyperbolic slicing condition adapted to Killing …
Living systems evolve one mutation at a time, but a single mutation can alter the effect of subsequent mutations. The underlying mechanistic determinants of such epistasis are unclear. Here, we demonstrate that the physical dynamics of a…
The classical theorem of Moser, on the existence of a normal form in the neighbourhood of a hyperbolic equilibrium, is extended to a class of real-analytic Hamiltonians with aperiodically time-dependent perturbations. A stronger result is…
In the paper a review of results for recovering of the weak equivalence principle in a space with deformed commutation relations for operators of coordinates and momenta is presented. Different types of deformed algebras leading to a space…
We study geometry of two-dimensional models of conformal space-time based on the group of Moebius transformation. The natural geometric invariants, called cycles, are used to linearise Moebius action. Conformal completion of the space-time…
We consider applying the Strang splitting to semilinear parabolic problems. The key ingredients of the Strang splitting are the decomposition of the equation into several parts and the computation of approximate solutions by combining the…
The function of protein, RNA, and DNA is modulated by fast, dynamic exchanges between three-dimensional conformations. Conformational sampling of biomolecules with exact and nullspace inverse kinematics, using rotatable bonds as revolute…
We study time dynamics of 1D disordered Heisenberg spin-1/2 chain focusing on a regime of large system sizes and a long time evolution. This regime is relevant for observation of many-body localization (MBL), a phenomenon that is expected…
We propose a generalization of the lasso that allows the model coefficients to vary as a function of a general set of modifying variables. These modifiers might be variables such as gender, age or time. The paradigm is quite general, with…
We study the evolution of passive scalars in both rigid and moving slab-like domains, in both horizontally periodic and infinite contexts. The scalar is required to satisfy Robin-type boundary conditions corresponding to Newton's law of…
We study the properties of coupled linear and nonlinear resonances. The fundamental phenomena and the level crossing scenarios are introduced for a nonlinear two-level system with one decaying state, describing the dynamics of a…
The adaptation rate in theoretical models of biological evolution increases with the mutation rate but only to a point when mutations into lethal states cause extinction. One would expect that removing such states should be beneficial for…
Quantum dynamics of the Bose-Hubbard Model is investigated through a semiclassical hamiltonian picture provided by the Time-Dependent Variational Principle method. The system is studied within a factorized slow/fast dynamics. The…
A unified model is constructed to study the recently observed DNA entropic elasticity, cooperative extensibility, and supercoiling property. With the introduction of a new structural parameter (the folding angle $\phi$), bending…
We study the effects of a repulsive three-body interaction on a system of trapped ultra-cold atoms in Bose-Einstein condensed state. The stationary solutions of the corresponding $s-$wave non-linear Schr\"{o}dinger equation suggest a…
Morphable models are fundamental to numerous human-centered processes as they offer a simple yet expressive shape space. Creating such morphable models, however, is both tedious and expensive. The main challenge is establishing dense…
Multidimensional scaling (MDS) is a widely used approach to representing high-dimensional, dependent data. MDS works by assigning each observation a location on a low-dimensional geometric manifold, with distance on the manifold…
The classical and quantum dynamics of simple time-reparametrization- invariant models containing two degrees of freedom are studied in detail. Elimination of one ``clock'' variable through the Hamiltonian constraint leads to a description…
Recently a Hamiltonian formulation for the evolution of the universe dominated by multiple oscillatory scalar fields was developed by the present author and was applied to the investigation of the evolution of cosmological perturbations on…
Recently, there has been an increasing interest on nonautonomous composition of perturbed hyperbolic systems: composing perturbations of a given hyperbolic map $F$ results in statistical behaviour close to that of $F$. We show this fact in…
Cold atoms in optical lattices allow for accurate studies of many body dynamics. Rapid time-dependent modifications of optical lattice potentials may result in significant excitations in atomic systems. The dynamics in such a case is…