Related papers: On Reconfiguring Tree Linkages: Trees can Lock
In this study, various rotationally symmetric tilings that can be formed using pentagons that are related to rhombus are discussed. The pentagons can be convex or concave and can be degenerated into a trapezoid. If the pentagons are convex,…
We consider the problem of deciding whether a polygonal knot in 3-dimensional Euclidean space is unknotted, capable of being continuously deformed without self-intersection so that it lies in a plane. We show that this problem, {\sc…
Nonsingular projective varieties which are both convex and rationally connected are considered. We ask whether such varieties must be algebraic homogeneous spaces G/P. In case X is a complete intersection, an affirmative answer is obtained…
Rearrangement operations transform a phylogenetic tree into another one and hence induce a metric on the space of phylogenetic trees. Popular operations for unrooted phylogenetic trees are NNI (nearest neighbour interchange), SPR (subtree…
Rooted phylogenetic networks provide a more complete representation of the ancestral relationship between species than phylogenetic trees when reticulate evolutionary processes are at play. One way to reconstruct a phylogenetic network is…
Continuing results from JCDCGGG 2016 and 2017, we solve several new cases of the simple foldability problem -- deciding which crease patterns can be folded flat by a sequence of (some model of) simple folds. We give new efficient algorithms…
An arborescence, which is a directed analogue of a spanning tree in an undirected graph, is one of the most fundamental combinatorial objects in a digraph. In this paper, we study arborescences in digraphs from the viewpoint of…
A classical result, fundamental to evolutionary biology, states that an edge-weighted tree $T$ with leaf set $X$, positive edge weights, and no vertices of degree 2 can be uniquely reconstructed from the set of leaf-to-leaf distances…
Reconfiguration problems involve determining whether two given configurations can be transformed into each other under specific rules. The Token Sliding problem asks whether, given two different set of tokens on vertices of a graph $G$, we…
We consider packing tree degree sequences in this paper. We set up a conjecture that any arbitrary number of tree degree sequences without common leaves have edge disjoint tree realizations. This conjecture is known to be true for $2$ and…
We study lattice polytopes which arise as the convex hull of chip vectors for \textit{self-reachable} chip configurations on a tree $T$. We show that these polytopes always have the integer decomposition property and characterize the vertex…
This paper proves the reconstruction conjecture for graphs which are isomorphic to the cube of a tree. The proof uses the reconstructibility of trees from their peripheral vertex deleted subgraphs. The main result follows from (i)…
\textsc{Directed Token Sliding} asks, given a directed graph and two sets of pairwise nonadjacent vertices, whether one can reach from one set to the other by repeatedly applying a local operation that exchanges a vertex in the current set…
A large class of phylogenetic networks can be obtained from trees by the addition of horizontal edges between the tree edges. These networks are called tree based networks. Reticulation-visible networks and child-sibling networks are all…
We prove several hardness results on folding origami crease patterns. Flat-folding finite crease patterns is fixed-parameter tractable in the ply of the folded pattern (how many layers overlap at any point) and the treewidth of an…
We show that every orthogonal polyhedron of genus at most 2 can be unfolded without overlap while using only a linear number of orthogonal cuts (parallel to the polyhedron edges). This is the first result on unfolding general orthogonal…
We consider questions related to the existence of spanning trees in graphs with the property that after the removal of any path in the tree the graph remains connected. We show that, for planar graphs, the existence of trees with this…
Natural and man-made networks often possess locally tree-like sub-structures. Taking such tree networks as our starting point, we show how the addition of links changes the synchronization properties of the network. We focus on two…
Topologically constrained genome-like polymers often double-fold into tree-like configurations, which can be modelled on the level of folded (ring) polymers or on the level of the underlying random trees. For both descriptions, we have…
Neural networks typically exhibit permutation symmetries which contribute to the non-convexity of the networks' loss landscapes, since linearly interpolating between two permuted versions of a trained network tends to encounter a high loss…