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This article proposes a novel approach to statistical alignment of nucleotide sequences by introducing a context dependent structure on the substitution process in the underlying evolutionary model. We propose to estimate alignments and…

Statistics Theory · Mathematics 2011-07-18 Ana Arribas-Gil , Catherine Matias

Citation texts are sometimes not very informative or in some cases inaccurate by themselves; they need the appropriate context from the referenced paper to reflect its exact contributions. To address this problem, we propose an unsupervised…

Computation and Language · Computer Science 2017-05-24 Arman Cohan , Nazli Goharian

Part-prototype networks have recently become methods of interest as an interpretable alternative to many of the current black-box image classifiers. However, the interpretability of these methods from the perspective of human users has not…

Computer Vision and Pattern Recognition · Computer Science 2024-01-08 Omid Davoodi , Shayan Mohammadizadehsamakosh , Majid Komeili

Visually-grounded models of spoken language understanding extract semantic information directly from speech, without relying on transcriptions. This is useful for low-resource languages, where transcriptions can be expensive or impossible…

Computation and Language · Computer Science 2020-10-08 Bertrand Higy , Desmond Elliott , Grzegorz Chrupała

Naturally-occurring bracketings, such as answer fragments to natural language questions and hyperlinks on webpages, can reflect human syntactic intuition regarding phrasal boundaries. Their availability and approximate correspondence to…

Computation and Language · Computer Science 2021-04-30 Tianze Shi , Ozan İrsoy , Igor Malioutov , Lillian Lee

In recent years, transformer-based language models have achieved state of the art performance in various NLP benchmarks. These models are able to extract mostly distributional information with some semantics from unstructured text, however…

Computation and Language · Computer Science 2021-02-08 Pedro Colon-Hernandez , Catherine Havasi , Jason Alonso , Matthew Huggins , Cynthia Breazeal

We introduce CM3, a family of causally masked generative models trained over a large corpus of structured multi-modal documents that can contain both text and image tokens. Our new causally masked approach generates tokens left to right…

We propose a method for non-projective dependency parsing by incrementally predicting a set of edges. Since the edges do not have a pre-specified order, we propose a set-based learning method. Our method blends graph, transition, and…

Machine Learning · Computer Science 2019-10-25 Sean Welleck , Kyunghyun Cho

We present a simple approach for text infilling, the task of predicting missing spans of text at any position in a document. While infilling could enable rich functionality especially for writing assistance tools, more attention has been…

Computation and Language · Computer Science 2020-09-14 Chris Donahue , Mina Lee , Percy Liang

Classic Topic Models are built under the Bag Of Words assumption, in which word position is ignored for simplicity. Besides, symmetric priors are typically used in most applications. In order to easily learn topics with different properties…

Computation and Language · Computer Science 2018-06-27 Simón Roca-Sotelo , Jerónimo Arenas-García

Autoregressive language models achieve remarkable performance, yet a unified theory explaining their internal mechanisms, how training shapes representations, and why these representations support complex behavior remains incomplete. We…

Machine Learning · Computer Science 2026-05-14 Yifan Zhang

Estimation of Markov Random Field and covariance models from high-dimensional data represents a canonical problem that has received a lot of attention in the literature. A key assumption, widely employed, is that of {\em sparsity} of the…

Optimization and Control · Mathematics 2018-05-16 Davoud Ataee Tarzanagh , George Michailidis

This paper attempts a more formal approach to the legibility of text based programming languages, presenting, with proof, minimum possible ways of representing structure in text interleaved with information. This presumes that a minimalist…

Programming Languages · Computer Science 2017-06-06 Brenton Chapin

The analysis of high-dimensional time series data has become increasingly important across a wide range of fields. Recently, a method for constructing the minimum information Markov kernel on finite state spaces was established. In this…

Methodology · Statistics 2026-01-13 Issey Sukeda , Tomonari Sei

Semantic segmentation research has recently witnessed rapid progress, but many leading methods are unable to identify object instances. In this paper, we present Multi-task Network Cascades for instance-aware semantic segmentation. Our…

Computer Vision and Pattern Recognition · Computer Science 2015-12-15 Jifeng Dai , Kaiming He , Jian Sun

Muller and Schupp introduced the concept of context-free graphs (originating from Cayley graphs of context-free groups). These graphs are always tree-like (i.e. quasi-isometric to a tree) and in this paper we investigate the subclass of…

Formal Languages and Automata Theory · Computer Science 2026-03-10 Jan Philipp Wächter

Most representation learning algorithms for language and image processing are local, in that they identify features for a data point based on surrounding points. Yet in language processing, the correct meaning of a word often depends on its…

Machine Learning · Computer Science 2014-02-19 Anjan Nepal , Alexander Yates

Formal languages let us define the textual representation of data with precision. Formal grammars, typically in the form of BNF-like productions, describe the language syntax, which is then annotated for syntax-directed translation and…

Formal Languages and Automata Theory · Computer Science 2015-01-15 Luis Quesada , Fernando Berzal , Juan-Carlos Cubero

When reading long-form text, human cognition is complex and structurized. While large language models (LLMs) process input contexts through a causal and sequential perspective, this approach can potentially limit their ability to handle…

Computation and Language · Computer Science 2024-11-01 Kai Liu , Zhihang Fu , Chao Chen , Wei Zhang , Rongxin Jiang , Fan Zhou , Yaowu Chen , Yue Wu , Jieping Ye

Bottom-Up Hidden Tree Markov Model is a highly expressive model for tree-structured data. Unfortunately, it cannot be used in practice due to the intractable size of its state-transition matrix. We propose a new approximation which lies on…

Machine Learning · Computer Science 2019-06-03 Daniele Castellana , Davide Bacciu