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Energy evaluation using fast Fourier transforms enables sampling billions of putative complex structures and hence revolutionized rigid protein-protein docking. However, in current methods efficient acceleration is achieved only in either…

The discrete prolate spheroidal sequences (DPSS's) provide an efficient representation for discrete signals that are perfectly timelimited and nearly bandlimited. Due to the high computational complexity of projecting onto the DPSS basis -…

Numerical Analysis · Mathematics 2017-08-14 Santhosh Karnik , Zhihui Zhu , Michael B. Wakin , Justin Romberg , Mark A. Davenport

Compression-based similarity measures are effectively employed in applications on diverse data types with a basically parameter-free approach. Nevertheless, there are problems in applying these techniques to medium-to-large datasets which…

Machine Learning · Statistics 2012-10-03 Daniele Cerra , Mihai Datcu

Order-preserving pattern matching was introduced recently but it has already attracted much attention. Given a reference sequence and a pattern, we want to locate all substrings of the reference sequence whose elements have the same…

Data Structures and Algorithms · Computer Science 2018-12-11 Gianni Decaroli , Travis Gagie , Giovanni Manzini

Prescriptive process monitoring seeks to recommend actions that improve process outcomes by analyzing possible continuations of ongoing cases. A key obstacle is the heavy computational cost of large-scale suffix comparisons, which grows…

Databases · Computer Science 2026-02-11 Sarra Madad

Time series forecasting uses historical data to predict future trends, leveraging the relationships between past observations and available features. In this paper, we propose RAFT, a retrieval-augmented time series forecasting method to…

Machine Learning · Computer Science 2025-05-08 Sungwon Han , Seungeon Lee , Meeyoung Cha , Sercan O Arik , Jinsung Yoon

We consider a similarity measure between two sets $A$ and $B$ of vectors, that balances the average and maximum cosine distance between pairs of vectors, one from set $A$ and one from set $B$. As a motivation for this measure, we present…

Data Structures and Algorithms · Computer Science 2021-08-31 Michael Leybovich , Oded Shmueli

FM-indexes are a crucial data structure in DNA alignment, for example, but searching with them usually takes at least one random access per character in the query pattern. Ferragina and Fischer observed in 2007 that word-based indexes often…

Data Structures and Algorithms · Computer Science 2023-05-11 Aaron Hong , Marco Oliva , Dominik Köppl , Hideo Bannai , Christina Boucher , Travis Gagie

The Fast Fourier Transform(FFT) is a classic signal processing algorithm that is utilized in a wide range of applications. For image processing, FFT computes on every pixel's value of an image, regardless of their properties in frequency…

Signal Processing · Electrical Eng. & Systems 2020-02-25 Sheng Shi , Runkai Yang , Haihang You

Graph similarity search has received considerable attention in many applications, such as bioinformatics, data mining, pattern recognition, and social networks. Existing methods for this problem have limited scalability because of the huge…

Databases · Computer Science 2016-12-30 Xiaoyang Chen , Hongwei Huo , Jun Huan , Jeffrey Scott Vitter

In this paper, we consider multiple signals sharing same instantaneous frequencies. This kind of data is very common in scientific and engineering problems. To take advantage of this special structure, we modify our data-driven…

Information Theory · Computer Science 2015-07-09 Thomas Y. Hou , Zuoqiang Shi

Image Representation learning via input reconstruction is a common technique in machine learning for generating representations that can be effectively utilized by arbitrary downstream tasks. A well-established approach is using…

Neural and Evolutionary Computing · Computer Science 2025-06-10 Raoof HojatJalali , Edmondo Trentin

Given a graph G and a query vertex q, the topic of community search (CS), aiming to retrieve a dense subgraph of G containing q, has gained much attention. Most existing works focus on undirected graphs which overlooks the rich information…

Databases · Computer Science 2023-11-20 Yankai Chen , Jie Zhang , Yixiang Fang , Xin Cao , Irwin King

In this article, we present an $O(N \log N)$ rapidly convergent algorithm for the numerical approximation of the convolution integral with radially symmetric weakly singular kernels and compactly supported densities. To achieve the reduced…

Numerical Analysis · Mathematics 2021-07-09 Awanish Kumar Tiwari , Ambuj Pandey , Jagabandhu Paul , Akash Anand

In this paper we propose a new fast Fourier transform to recover a real nonnegative signal ${\bf x}$ from its discrete Fourier transform. If the signal ${\mathbf x}$ appears to have a short support, i.e., vanishes outside a support interval…

Numerical Analysis · Mathematics 2020-02-19 Gerlind Plonka , Katrin Wannenwetsch

This letter is on the performance of the turbo signal recovery (TSR) algorithm for partial discrete Fourier transform (DFT) matrices based compressed sensing. Based on state evolution analysis, we prove that TSR with a partial DFT sensing…

Information Theory · Computer Science 2016-11-15 Junjie Ma , Xiaojun Yuan , Li Ping

Collaborative path planning for robot swarms in complex, unknown environments without external positioning is a challenging problem. This requires robots to find safe directions based on real-time environmental observations, and to…

Robotics · Computer Science 2025-01-03 Chenxi Li , Weining Lu , Zhihao Ma , Litong Meng , Bin Liang

Motivated by a host of recent applications requiring some amount of redundancy, frames are becoming a standard tool in the signal processing toolbox. In this paper, we study a specific class of frames, known as discrete Fourier transform…

Information Theory · Computer Science 2015-06-05 Mojtaba Vaezi , Fabrice Labeau

Feature fusion is a commonly used strategy in image retrieval tasks, which aggregates the matching responses of multiple visual features. Feasible sets of features can be either descriptors (SIFT, HSV) for an entire image or the same…

Information Retrieval · Computer Science 2018-11-01 Zhongdao Wang , Liang Zheng , Shengjin Wang

Edge devices are being deployed at increasing volumes to sense and act on information from the physical world. The discrete Fourier transform (DFT) is often necessary to make this sensed data suitable for further processing -- such as by…