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We generalize the problem of reconstructing strings from their substring compositions first introduced by Acharya et al. in 2015 motivated by polymer-based advanced data storage systems utilizing mass spectrometry. Namely, we see strings as…

Combinatorics · Mathematics 2025-04-02 Antoine Dailly , Tuomo Lehtilä

Deciding whether a collection of unrooted trees is compatible is a fundamental problem in phylogenetics. Two different graph-theoretic characterizations of tree compatibility have recently been proposed. In one of these, tree compatibility…

Discrete Mathematics · Computer Science 2012-10-16 Sudheer Vakati , David Fernández-Baca

Comparability graphs are the undirected graphs whose edges can be directed so that the resulting directed graph is transitive. They are related to posets and have applications in scheduling theory. This paper considers the problem of…

Data Structures and Algorithms · Computer Science 2015-03-11 Marc Tedder

Given a graph, does there exist an orientation of the edges such that the resulting directed graph is strongly connected? Robbins' theorem [Robbins, Am. Math. Monthly, 1939] states that such an orientation exists if and only if the graph is…

Data Structures and Algorithms · Computer Science 2017-08-25 Anders Aamand , Niklas Hjuler , Jacob Holm , Eva Rotenberg

One of the fundamental problems of interest for discrete-time linear systems is whether its input sequence may be recovered given its output sequence, a.k.a. the left inversion problem. Many conditions on the state space geometry, dynamics,…

Optimization and Control · Mathematics 2024-04-01 Kyle Poe , Enrique Mallada , Rene Vidal

Given a rooted tree and a ranking of its leaves, what is the minimum number of inversions of the leaves that can be attained by ordering the tree? This variation of the problem of counting inversions in arrays originated in mathematical…

Data Structures and Algorithms · Computer Science 2024-07-02 Ivan Hu , Dieter van Melkebeek , Andrew Morgan

In recent years, questions about the construction of special orderings of a given graph search were studied by several authors. On the one hand, the so called end-vertex problem introduced by Corneil et al. in 2010 asks for search orderings…

Discrete Mathematics · Computer Science 2023-07-17 Robert Scheffler

The Aho, Hopcroft and Ullman (AHU) algorithm has been the state of the art since the 1970s for determining in linear time whether two unordered rooted trees are isomorphic or not. However, it has been criticized (by Campbell and Radford)…

Data Structures and Algorithms · Computer Science 2024-02-13 Florian Ingels

The problem of counting plane trees with $n$ edges and an even or an odd number of leaves was studied by Eu, Liu and Yeh, in connection with an identity on coloring nets due to Stanley. This identity was also obtained by Bonin, Shapiro and…

Combinatorics · Mathematics 2007-05-23 William Y. C. Chen , Louis W. Shapiro , Laura L. M. Yang

Given a connected undirected graph G = [V; E] where |E| =2(|V| -1), we present two algorithms to check if G can be decomposed into two edge disjoint spanning trees, and provide such a decomposition when it exists. Unlike previous algorithms…

Data Structures and Algorithms · Computer Science 2018-11-28 Hemant Malik , Ovidiu Daescu , Ramaswamy Chandrasekaran

In this paper, we show a connection between a certain online low-congestion routing problem and an online prediction of graph labeling. More specifically, we prove that if there exists a routing scheme that guarantees a congestion of…

Data Structures and Algorithms · Computer Science 2008-09-12 Jittat Fakcharoenphol , Boonserm Kijsirikul

Lov\'asz (1967) showed that two graphs $G$ and $H$ are isomorphic if, and only if, they are homomorphism indistinguishable over all graphs, i.e., $G$ and $H$ admit the same number of number of homomorphisms from every graph $F$.…

Combinatorics · Mathematics 2026-01-27 Daniel Neuen , Tim Seppelt

The correlated Erd\"os-R\'enyi random graph ensemble is a probability law on pairs of graphs with $n$ vertices, parametrized by their average degree $\lambda$ and their correlation coefficient $s$. It can be used as a benchmark for the…

Disordered Systems and Neural Networks · Physics 2024-11-21 Andrea Muratori , Guilhem Semerjian

In the past two decades, various properties of randomly perturbed/augmented (hyper)graphs have been intensively studied, since the model was introduced by Bohman, Frieze and Martin in 2003. The model usually considers a deterministic graph…

Combinatorics · Mathematics 2025-08-26 Jie Han , Seonghyuk Im , Bin Wang , Junxue Zhang

We study the quantum query complexity of minor-closed graph properties, which include such problems as determining whether an $n$-vertex graph is planar, is a forest, or does not contain a path of a given length. We show that most…

Quantum Physics · Physics 2011-05-20 Andrew M. Childs , Robin Kothari

We investigate the number of permutations that occur in random labellings of trees. This is a generalisation of the number of subpermutations occurring in a random permutation. It also generalises some recent results on the number of…

Probability · Mathematics 2022-12-22 Michael Albert , Cecilia Holmgren , Tony Johansson , Fiona Skerman

In 1981, Duffus, Gould, and Jacobson showed that every connected graph either has a Hamiltonian path, or contains a claw ($K_{1,3}$) or a net (a fixed six-vertex graph) as an induced subgraph. This implies that subject to being connected,…

Combinatorics · Mathematics 2022-08-09 Joseph Cheriyan , Sepehr Hajebi , Zishen Qu , Sophie Spirkl

This paper studies the important problem of finding all $k$-nearest neighbors to points of a query set $Q$ in another reference set $R$ within any metric space. Our previous work defined compressed cover trees and corrected the key…

Computational Geometry · Computer Science 2022-01-21 Yury Elkin , Vitaliy Kurlin

We consider random binary trees that appear as the output of certain standard algorithms for sorting and searching if the input is random. We introduce the subtree size metric on search trees and show that the resulting metric spaces…

Probability · Mathematics 2014-05-06 Rudolf Grübel

A tree is said to be even if for every pair of distinct leaves, the length of the unique path between them is even. In this paper we discuss the problem of determining whether an input graph has a spanning even tree. Hofmann and Walsh…

Data Structures and Algorithms · Computer Science 2024-12-24 Tesshu Hanaka , Yasuaki Kobayashi , Kazuhiro Kurita , Yasuko Matsui , Atsuki Nagao , Hirotaka Ono , Kazuhisa Seto