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The relationship between network topology and system dynamics has significant implications for unifying our understanding of the interplay among metabolic, gene-regulatory, and ecosystem network architecures. Here we analyze the stability…

Populations and Evolution · Quantitative Biology 2015-06-17 Cameron Smith , Raymond S. Puzio , Aviv Bergman

The study of the interplay between the structure and dynamics of complex multilevel systems is a pressing challenge nowadays. In this paper, we use a semi-annealed approximation to study the stability properties of Random Boolean Networks…

Physics and Society · Physics 2012-10-31 Emanuele Cozzo , Alex Arenas , Yamir Moreno

The topologies of predictable dynamic networks are continuously dynamic in terms of node position, network connectivity and link metric. However, their dynamics are almost predictable compared with the ad-hoc network. The existing routing…

Networking and Internet Architecture · Computer Science 2018-08-20 Zengyin Yang , Qian Wu , Zhize Li , Hewu Li , Jianping Wu

In this work, we apply a phase-field modeling framework to elucidate the interplay between nucleation and kinetics in the dynamic evolution of twinning interfaces. The key feature of this phase-field approach is the ability to transparently…

Materials Science · Physics 2024-08-22 Janel Chua , Vaibhav Agrawal , Noel Walkington , George Gazonas , Kaushik Dayal

We consider a one-dimensional network in which the nodes at Euclidean distance $l$ can have long range connections with a probabilty $P(l) \sim l^{-\delta}$ in addition to nearest neighbour connections. This system has been shown to exhibit…

Statistical Mechanics · Physics 2009-11-07 Parongama Sen , Kinjal Banerjee , Turbasu Biswas

Preferential attachment is a popular model of growing networks. We consider a generalized model with random node removal, and a combination of preferential and random attachment. Using a high-degree expansion of the master equation, we…

Statistical Mechanics · Physics 2012-01-20 Heiko Bauke , Cristopher Moore , Jean-Baptiste Rouquier , David Sherrington

Topological data analysis provides a set of tools to uncover low-dimensional structure in noisy point clouds. Prominent amongst the tools is persistence homology, which summarizes birth-death times of homological features using data objects…

Methodology · Statistics 2024-02-05 James Matuk , Sebastian Kurtek , Karthik Bharath

The dynamics of a single chain tethered to an interface and in contact with a cross-linked network is examined numerically. When the network is put in contact with the tethered chain, the chain moves with dynamics that are highly…

Condensed Matter · Physics 2008-02-03 J. M. Deutsch , Hyoungsoo Yoon

We explore the evolution of daily returns of four major US stock market indices during the technology crash of 2000, and the financial crisis of 2007-2009. Our methodology is based on topological data analysis (TDA). We use persistence…

Mathematical Finance · Quantitative Finance 2017-11-22 Marian Gidea , Yuri Katz

In the literature, for semidynamical systems in infinite dimensional phase spaces, different topological structures are used (Hilbert, Banach, Sobolev, locally convex, Hausdorf topology etc.). That is because there are neither set rules nor…

Dynamical Systems · Mathematics 2018-06-20 Stefan Balint , Agneta M. Balint

Knot theory provides a powerful tool for the understanding of topological matters in biology, chemistry, and physics. Here knot theory is introduced to describe topological phases in the quantum spin system. Exactly solvable models with…

Strongly Correlated Electrons · Physics 2019-06-24 X. M. Yang , L. Jin , Z. Song

We characterize the geometrical and topological aspects of a dynamical system by associating a geometric phase with a phase space trajectory. Using the example of a nonlinear driven damped oscillator, we show that this phase is resilient to…

Chaotic Dynamics · Physics 2007-05-23 Radha Balakrishnan , Indubala Satija

We introduce a method of time series analysis for two-dimensional transient flow patterns based on Topological Flow Data Analysis (TFDA), a new approach to topological data analysis. TFDA identifies local topological flow structures from an…

Fluid Dynamics · Physics 2026-04-14 Takashi Sakajo , Takeshi Matsumoto , Shizuo Kaji , Tomoo Yokoyama , Tomoki Uda

We study a version of the Tangled Nature model of evolutionary ecology redefined in a phenotype space where mutants have properties correlated to their parents. The model has individual-based dynamics whilst incorporating species scale…

Populations and Evolution · Quantitative Biology 2016-09-08 Simon Laird , Henrik Jeldtoft Jensen

We introduce a framework for analyzing topological tipping in time-evolutionary point clouds by extending the recently proposed Topological Optimal Transport (TpOT) distance. While TpOT unifies geometric, homological, and higher-order…

Machine Learning · Statistics 2026-03-18 Yixin Wang , Ting Gao , Jinqiao Duan

As in an earlier paper we start from the hypothesis that physics on the Planck scale should be described by means of concepts taken from ``discrete mathematics''. This goal is realized by developing a scheme being based on the dynamical…

High Energy Physics - Theory · Physics 2016-09-06 Manfred Requardt

Topology is a fundamental aspect of quantum physics, and it has led to key breakthroughs and results in various fields of quantum materials. In condensed matters, this has culminated in the recent discovery of symmetry-protected topological…

Materials Science · Physics 2023-10-24 Baokai Wang , Yi-Chun Hung , Xiaoting Zhou , Tzen Ong , Hsin Lin

Although neural networks are capable of reaching astonishing performances on a wide variety of contexts, properly training networks on complicated tasks requires expertise and can be expensive from a computational perspective. In industrial…

Machine Learning · Statistics 2021-05-11 Théo Lacombe , Yuichi Ike , Mathieu Carriere , Frédéric Chazal , Marc Glisse , Yuhei Umeda

We develop methods to probe the excitation spectrum of topological phases of matter in two spatial dimensions. Applying these to the Fibonacci string nets perturbed away from exact solvability, we analyze a topological phase transition…

Strongly Correlated Electrons · Physics 2017-10-25 Michaël Mariën , Jutho Haegeman , Paul Fendley , Frank Verstraete

We study a minimal model of a system with coexisting nematic and polar orientational orders, where one field tends to order and the other prefers isotropy. For strong coupling, the ordered field aligns the isotropic one, locking their…

Soft Condensed Matter · Physics 2025-01-10 Farzan Vafa , Amin Doostmohammadi
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