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Molecular dynamics is widely used to study various phenomena, such as diffusion, shock wave propagation, and plasma dynamics. A wide range of software packages supports the expanding scope of molecular dynamics applications. However, the…

Computational Physics · Physics 2025-12-01 I. S. Galtsov , R. V. Muratov , G. V. Vyskvarko , S. A. Murzov , S. A. Dyachkov , P. R. Levashov

Fault tolerance overhead of high performance computing (HPC) applications is becoming critical to the efficient utilization of HPC systems at large scale. HPC applications typically tolerate fail-stop failures by checkpointing. Another…

Distributed, Parallel, and Cluster Computing · Computer Science 2011-06-22 Erlin Yao , Mingyu Chen , Rui Wang , Wenli Zhang , Guangming Tan

Coordination services are a fundamental building block of modern cloud systems, providing critical functionalities like configuration management and distributed locking. The major challenge is to achieve low latency and high throughput…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-02-23 Xin Jin , Xiaozhou Li , Haoyu Zhang , Nate Foster , Jeongkeun Lee , Robert Soule , Changhoon Kim , Ion Stoica

Deduplication has been largely employed in distributed storage systems to improve space efficiency. Traditional deduplication research ignores the design specifications of shared-nothing distributed storage systems such as no central…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-03-22 Awais Khan , Chang-Gyu Lee , Prince Hamandawana , Sungyong Park , Youngjae Kim

MANA-2.0 is a scalable, future-proof design for transparent checkpointing of MPI-based computations. Its network transparency ("network-agnostic") feature ensures that MANA-2.0 will provide a viable, efficient mechanism for transparently…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-12-14 Yao Xu , Zhengji Zhao , Rohan Garg , Harsh Khetawat , Rebecca Hartman-Baker , Gene Cooperman

Blockchain and distributed ledger technologies (DLTs) facilitate decentralized computations across trust boundaries. However, ensuring complex computations with low gas fees and confidentiality remains challenging. Recent advances in…

Cryptography and Security · Computer Science 2026-02-12 Fernando Castillo , Jonathan Heiss , Sebastian Werner , Stefan Tai

The increasing performance requirements of modern applications place a significant burden on software-based packet processing. Most of today's software input/output accelerations achieve high performance at the expense of reserving CPU…

Networking and Internet Architecture · Computer Science 2021-05-24 Marco Faltelli , Giacomo Belocchi , Francesco Quaglia , Salvatore Pontarelli , Giuseppe Bianchi

MATLAB has emerged as one of the languages most commonly used by scientists and engineers for technical computing, with ~1,000,000 users worldwide. The compute intensive nature of technical computing means that many MATLAB users have codes…

Astrophysics · Physics 2015-05-26 Nadya Bliss , Jeremy Kepner

Current high-performance computer systems used for scientific computing typically combine shared memory computational nodes in a distributed memory environment. Extracting high performance from these complex systems requires tailored…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-01-14 Afshin Zafari , Elisabeth Larsson , Martin Tillenius

Replicating data across multiple data centers not only allows moving the data closer to the user and, thus, reduces latency for applications, but also increases the availability in the event of a data center failure. Therefore, it is not…

Databases · Computer Science 2012-03-28 Tim Kraska , Gene Pang , Michael J. Franklin , Samuel Madden

The globally distributed computing infrastructure required to cope with the multi-petabytes datasets produced by the Compact Muon Solenoid (CMS) experiment at the Large Hadron Collider (LHC) at CERN comprises several subsystems, such as…

Software Engineering · Computer Science 2020-07-08 Christian Ariza-Porras , Valentin Kuznetsov , Federica Legger

Comparative evaluation of several systems is a recurrent task in researching. It is a key step before deciding which system to use for our work, or, once our research has been conducted, to demonstrate the potential of the resulting model.…

Computation and Language · Computer Science 2026-02-24 Sergio Gómez González , Miguel Domingo , Francisco Casacuberta

High-speed packet processing on multicore CPUs places extreme demands on memory allocators. In systems like DPDK, fixed-size memory pools back packet buffers (mbufs) to avoid costly dynamic allocation. However, even DPDK's optimized mempool…

Performance · Computer Science 2026-03-24 Junyi Yang

Secure multi-party computation (MPC) is a fundamental problem in secure distributed computing. An MPC protocol allows a set of $n$ mutually distrusting parties to carry out any joint computation of their private inputs, without disclosing…

Cryptography and Security · Computer Science 2022-08-10 Ananya Appan , Anirudh Chandramouli , Ashish Choudhury

Model Context Protocol (MCP) servers contain a collection of thousands of open-source standardized tools, linking LLMs to external systems; however, existing datasets and benchmarks lack realistic, human-like user queries, remaining a…

Artificial Intelligence · Computer Science 2026-03-02 Shubh Laddha , Lucas Changbencharoen , Win Kuptivej , Surya Shringla , Archana Vaidheeswaran , Yash Bhaskar

Stream processing in the last decade has seen broad adoption in both commercial and research settings. One key element for this success is the ability of modern stream processors to handle failures while ensuring exactly-once processing…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-03-21 George Siachamis , Kyriakos Psarakis , Marios Fragkoulis , Arie van Deursen , Paris Carbone , Asterios Katsifodimos

Faults in high-performance systems are expected to be very large in the current exascale computing era. To compensate for a higher failure rate, the standard checkpoint/restart technique would need to create checkpoints at a much higher…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-04-15 Sarthak Joshi , Sathish Vadhiyar

The 3D Discrete Fourier Transform (DFT) is a technique used to solve problems in disparate fields. Nowadays, the commonly adopted implementation of the 3D-DFT is derived from the Fast Fourier Transform (FFT) algorithm. However, evidence…

Computational Physics · Physics 2024-07-10 Nitin Malapally , Viacheslav Bolnykh , Estela Suarez , Paolo Carloni , Thomas Lippert , Davide Mandelli

A new style of temporal debugging is proposed. The new URDB debugger can employ such techniques as temporal search for finding an underlying fault that is causing a bug. This improves on the standard iterative debugging style, which…

Operating Systems · Computer Science 2009-10-28 Ana Maria Visan , Artem Polyakov , Praveen S. Solanki , Kapil Arya , Tyler Denniston , Gene Cooperman

As the Large Hadron Collider (LHC) continues its upward progression in energy and luminosity towards the planned High-Luminosity LHC (HL-LHC) in 2025, the challenges of the experiments in processing increasingly complex events will also…

Instrumentation and Detectors · Physics 2022-10-05 Paul Lujan , Valerie Halyo
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