Related papers: The Common Prefix Problem On Trees
We prove that finding a $k$-edge induced subgraph is fixed-parameter tractable, thereby answering an open problem of Leizhen Cai. Our algorithm is based on several combinatorial observations, Gauss' famous \emph{Eureka} theorem [Andrews,…
This paper studies the complexity of query evaluation for databases whose relations are partially ordered; the problem commonly arises when combining or transforming ordered data from multiple sources. We focus on queries in a useful…
The problem of matching a query string to a directed graph, whose vertices are labeled by strings, has application in different fields, from data mining to computational biology. Several variants of the problem have been considered,…
Complex queries for massive data analysis jobs have become increasingly commonplace. Many such queries contain com- mon subexpressions, either within a single query or among multiple queries submitted as a batch. Conventional query…
We consider Upper Domination, the problem of finding the minimal dominating set of maximum cardinality. Very few exact algorithms have been described for solving Upper Domination. In particular, no binary programming formulations for Upper…
A \emph{binary tanglegram} is a drawing of a pair of rooted binary trees whose leaf sets are in one-to-one correspondence; matching leaves are connected by inter-tree edges. For applications, for example, in phylogenetics, it is essential…
In this work we consider the problem of maximizing the PageRank of a given target node in a graph by adding $k$ new links. We consider the case that the new links must point to the given target node (backlinks). Previous work shows that…
We present a simple $O(n^4)$-time algorithm for computing optimal search trees with two-way comparisons. The only previous solution to this problem, by Anderson et al., has the same running time, but is significantly more complicated and is…
In this paper we study the Prefix Sum problem introduced by Fredman. We show that it is possible to perform both update and retrieval in O(1) time simultaneously under a memory model in which individual bits may be shared by several words.…
We continue studying the problem of analytic approximation of matrix functions. We introduce the notion of a partial canonical factorization of a badly approximable matrix function $\Phi$ and the notion of a canonical factorization of a…
Given a set of $k$ strings $I$, their longest common subsequence (LCS) is the string with the maximum length that is a subset of all the strings in $I$. A data-structure for this problem preprocesses $I$ into a data-structure such that the…
The data arrangement problem on regular trees (DAPT) consists in assigning the vertices of a given graph G, called the guest graph, to the leaves of a d-regular tree T, called the host graph, such that the sum of the pairwise distances of…
The clique problems, including $k$-CLIQUE and Triangle Finding, form an important class of computational problems; the former is an NP-complete problem, while the latter directly gives lower bounds for Matrix Multiplication. A number of…
The classical, ubiquitous, predecessor problem is to construct a data structure for a set of integers that supports fast predecessor queries. Its generalization to weighted trees, a.k.a. the weighted ancestor problem, has been extensively…
It has been shown in the indexing literature that there is an essential difference between prefix/range searches on the one hand, and predecessor/rank searches on the other hand, in that the former provably allows faster query resolution.…
The Steiner Forest problem, also known as the Generalized Steiner Tree problem, is a fundamental optimization problem on edge-weighted graphs where, given a set of vertex pairs, the goal is to select a minimum-cost subgraph such that each…
In the past few years powerful generalizations to the Euclidean k-means problem have been made, such as Bregman clustering [7], co-clustering (i.e., simultaneous clustering of rows and columns of an input matrix) [9,18], and tensor…
We present a compressed representation of tries based on top tree compression [ICALP 2013] that works on a standard, comparison-based, pointer machine model of computation and supports efficient prefix search queries. Namely, we show how to…
``Algorithms with predictions'', or ``learning-augmented algorithms'', has proved to be an extremely useful paradigm for combining machine learning with traditional algorithms. One of the textbook settings for this is searching a sorted…
We provide a randomized linear time approximation scheme for a generic problem about clustering of binary vectors subject to additional constrains. The new constrained clustering problem encompasses a number of problems and by solving it,…