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We study the class of all finite directed graphs up to primitive positive constructability. The resulting order has a unique greatest element, namely the graph $P_1$ with one vertex and no edges. The graph $P_1$ has a unique greatest lower…

Combinatorics · Mathematics 2022-10-11 Florian Starke , Manuel Bodirsky

In this paper, we define and study the concept of traceable regressions. These are sequences of regressions in joint or single responses for which a corresponding regression graph captures not only an independence structure but represents,…

Methodology · Statistics 2012-05-09 Nanny Wermuth

We study spreading processes in temporal graphs, i. e., graphs whose connections change over time. These processes naturally model real-world phenomena such as infectious diseases or information flows. More precisely, we investigate how…

Data Structures and Algorithms · Computer Science 2021-07-21 Hendrik Molter , Malte Renken , Philipp Zschoche

At the intersection of computation and cognitive science, graph theory is utilized as a formalized description of complex relationships and structures. Traditional graph models are often static, lacking dynamic and autonomous behavioral…

Neurons and Cognition · Quantitative Biology 2024-06-11 Hui Wei , Chenyue Feng , Jianning Zhang

As countless examples show, it can be fruitful to study a sequence of complicated objects all at once via the formalism of generating functions. We apply this point of view to the homology and combinatorics of orbit configuration spaces:…

Algebraic Topology · Mathematics 2020-04-22 Christin Bibby , Nir Gadish

Persistence diagrams, the most common descriptors of Topological Data Analysis, encode topological properties of data and have already proved pivotal in many different applications of data science. However, since the (metric) space of…

Machine Learning · Statistics 2020-03-10 Mathieu Carrière , Frédéric Chazal , Yuichi Ike , Théo Lacombe , Martin Royer , Yuhei Umeda

Many real-world complex systems are characterized by non-pairwise -- higher-order -- interactions among system's units, and can be effectively modeled as hypergraphs. Directed hypergraphs distinguish between source and target sets within…

Physics and Society · Physics 2025-12-17 Quintino Francesco Lotito , Alberto Vendramini , Alberto Montresor , Federico Battiston

Persistent homology enables fast and computable comparison of topological objects. However, it is naturally limited to the analysis of topological spaces. We extend the theory of persistence, by guaranteeing robustness and computability to…

Combinatorics · Mathematics 2020-09-16 Mattia G. Bergomi , Massimo Ferri , Pietro Vertechi , Lorenzo Zuffi

Random geometric graphs (RGG) can be formalized as hidden-variables models where the hidden variables are the coordinates of the nodes. Here we develop a general approach to extract the typical configurations of a generic hidden-variables…

Disordered Systems and Neural Networks · Physics 2015-04-28 Massimo Ostilli , Ginestra Bianconi

Statisticians and quantitative neuroscientists have actively promoted the use of independence relationships for investigating brain networks, genomic networks, and other measurement technologies. Estimation of these graphs depends on two…

Methodology · Statistics 2014-10-15 Fang Han , Huitong Qiu , Han Liu , Brian Caffo

To any inhibition-dominated threshold-linear network (TLN) we can associate a directed graph that captures the pattern of strong and weak inhibition between neurons. Robust motifs are graphs for which the structure of fixed points in the…

Neurons and Cognition · Quantitative Biology 2019-12-18 Carina Curto , Christopher Langdon , Katherine Morrison

Given a graph $G$ whose edges are perfectly reliable and whose nodes each operate independently with probability $p\in[0,1],$ the node reliability of $G$ is the probability that at least one node is operational and that the operational…

Combinatorics · Mathematics 2018-02-14 Jason Brown , Lucas Mol

Motion planning is a fundamental problem of robotics with applications in many areas of computer science and beyond. Its restriction to graphs has been investigated in the literature for it allows to concentrate on the combinatorial problem…

Discrete Mathematics · Computer Science 2009-04-14 Zhilin Wu , Stephane Grumbach

Preservers and additive spanners are sparse (hence cheap to store) subgraphs that preserve the distances between given pairs of nodes exactly or with some small additive error, respectively. Since real-world networks are prone to failures,…

Data Structures and Algorithms · Computer Science 2017-03-31 Greg Bodwin , Fabrizio Grandoni , Merav Parter , Virginia Vassilevska Williams

Persistence diagrams are common descriptors of the topological structure of data appearing in various classification and regression tasks. They can be generalized to Radon measures supported on the birth-death plane and endowed with an…

Computational Geometry · Computer Science 2022-12-19 Alex Elchesen , Iryna Hartsock , Jose A. Perea , Tatum Rask

The stability method is very useful for obtaining exact solutions of many extremal graph problems. Its key step is to establish the stability property which, roughly speaking, states that any two almost optimal graphs of the same order $n$…

Combinatorics · Mathematics 2010-07-30 Oleg Pikhurko

The stability theorem for persistent homology is a central result in topological data analysis. While the original formulation of the result concerns the persistence barcodes of $\mathbb{R}$-valued functions, the result was later cast in a…

Algebraic Topology · Mathematics 2018-10-24 Magnus Bakke Botnan , Michael Lesnick

A graph generative model defines a distribution over graphs. One type of generative model is constructed by autoregressive neural networks, which sequentially add nodes and edges to generate a graph. However, the likelihood of a graph under…

Machine Learning · Statistics 2021-06-15 Xiaohui Chen , Xu Han , Jiajing Hu , Francisco J. R. Ruiz , Liping Liu

Conditional graph generation tasks involve training a model to generate a graph given a set of input conditions. Many previous studies employ autoregressive models to incrementally generate graph components such as nodes and edges. However,…

Machine Learning · Computer Science 2023-05-26 Jie Bu , Kazi Sajeed Mehrab , Anuj Karpatne

This paper addresses questions regarding controllability for `generic parameter' dynamical systems, i.e. the question whether a dynamical system is `structurally controllable'. Unlike conventional methods that deal with structural…

Optimization and Control · Mathematics 2010-06-29 Madhu N. Belur , Sivaramakrishnan Sivasubramanian