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Evolutionary accumulation models (EvAMs) are an emerging class of machine learning methods designed to infer the evolutionary pathways by which features are acquired. Applications include cancer evolution (accumulation of mutations),…

Populations and Evolution · Quantitative Biology 2026-03-13 Iain G. Johnston

Graphs are commonly used to represent objects, such as images and text, for pattern classification. In a dynamic world, an object may continuously evolve over time, and so does the graph extracted from the underlying object. These changes…

Data Structures and Algorithms · Computer Science 2017-06-14 Haishuai Wang

Evolutionary games on graphs play an important role in the study of evolution of cooperation in applied biology. Using rigorous mathematical concepts from a dynamical systems and graph theoretical point of view, we formalize the notions of…

Dynamical Systems · Mathematics 2014-11-18 Jeremias Epperlein , Stefan Siegmund , Petr Stehlík

A notion of quantum natural evolution strategies is introduced, which provides a geometric synthesis of a number of known quantum/classical algorithms for performing classical black-box optimization. Recent work of Gomes et al. [2019] on…

Quantum Physics · Physics 2020-11-23 Tianchen Zhao , Giuseppe Carleo , James Stokes , Shravan Veerapaneni

With the recent advance of representation learning algorithms on graphs (e.g., DeepWalk/GraphSage) and natural languages (e.g., Word2Vec/BERT) , the state-of-the art models can even achieve human-level performance over many downstream…

Social and Information Networks · Computer Science 2024-11-12 Xingzhi Guo

Discriminating between competing explanatory models as to which is more likely responsible for the growth of a network is a problem of fundamental importance for network science. The rules governing this growth are attributed to mechanisms…

Social and Information Networks · Computer Science 2021-04-21 Naomi A. Arnold , Raul J. Mondragon , Richard G. Clegg

The h-index can be used as a predictor of itself. However, the evolution of the h-index with time is shown in the present investigation to be dominated for several years by citations to previous publications rather than by new scientific…

Physics and Society · Physics 2013-09-19 Michael Schreiber

Machine Learning produces efficient decision and prediction models based on input-output data only. Such models have the form of decision trees or neural nets and are far from transparent analytical models, based on mathematical formulas.…

Artificial Intelligence · Computer Science 2025-05-20 Jakub Skrzyński , Dominik Sepioło , Antoni Ligęza

We formulate the search for phenomenological models of synaptic plasticity as an optimization problem. We employ Cartesian genetic programming to evolve biologically plausible human-interpretable plasticity rules that allow a given network…

Neural and Evolutionary Computing · Computer Science 2021-02-09 Henrik D. Mettler , Maximilian Schmidt , Walter Senn , Mihai A. Petrovici , Jakob Jordan

Bio-inspired algorithms utilize natural processes such as evolution, swarm behavior, foraging, and plant growth to solve complex, nonlinear, high-dimensional optimization problems. However, a plethora of these algorithms require a more…

Evolution has fascinated quantitative and physical scientists for decades: how can the random process of mutation, recombination, and duplication of genetic information generate the diversity of life? What determines the rate of evolution?…

Populations and Evolution · Quantitative Biology 2018-04-23 Richard A. Neher , Aleksandra M. Walczak

Many innovations are inspired by past ideas in a non-trivial way. Tracing these origins and identifying scientific branches is crucial for research inspirations. In this paper, we use citation relations to identify the descendant chart,…

Physics and Society · Physics 2015-05-30 S. Gualdi , C. H. Yeung , Y. -C. Zhang

The quest for historically impactful science and technology provides invaluable insight into the innovation dynamics of human society, yet many studies are limited to qualitative and small-scale approaches. Here, we investigate scientific…

Physics and Society · Physics 2015-02-19 Jinhyuk Yun , Pan-Jun Kim , Hawoong Jeong

Phylogenetic trees are simple models of evolutionary processes. They describe conditionally independent divergent evolution of taxa from common ancestors. Phylogenetic trees commonly do not have enough flexibility to adequately model all…

Populations and Evolution · Quantitative Biology 2025-11-11 Jonathan D. Mitchell , Barbara R. Holland

More than 80% of today's data is unstructured in nature, and these unstructured datasets evolve over time. A large part of these datasets are text documents generated by media outlets, scholarly articles in digital libraries, findings from…

Computation and Language · Computer Science 2019-03-21 Roberto Camacho Barranco , Raimundo F. Dos Santos , M. Shahriar Hossain

Document retrieval is one of the best established information retrieval activities since the sixties, pervading all search engines. Its aim is to obtain, from a collection of text documents, those most relevant to a pattern query. Current…

Information Retrieval · Computer Science 2013-10-01 Gonzalo Navarro

Ontologies such as taxonomies, product catalogs or web directories are heavily used and hence evolve frequently to meet new requirements or to better reflect the current instance data of a domain. To effectively manage the evolution of…

Databases · Computer Science 2010-10-04 Michael Hartung , Anika Groß , Erhard Rahm

Natural data is often organized as a hierarchical composition of features. How many samples do generative models need in order to learn the composition rules, so as to produce a combinatorially large number of novel data? What signal in the…

Machine Learning · Statistics 2025-06-05 Alessandro Favero , Antonio Sclocchi , Francesco Cagnetta , Pascal Frossard , Matthieu Wyart

Most words have several senses and connotations which evolve in time due to semantic shift, so that closely related words may gain different or even opposite meanings over the years. This evolution is very relevant to the study of language…

Computation and Language · Computer Science 2018-05-31 Jean-François Delpech

Equality saturation is an emerging technique for program and query optimization developed in the programming language community. It performs term rewriting over an E-graph, a data structure that compactly represents a program space. Despite…

Programming Languages · Computer Science 2025-01-07 Dan Suciu , Yisu Remy Wang , Yihong Zhang
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