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Intrinsically disordered proteins (IDPs) are important for biological functions. In contrast to folded proteins, molecular recognition among certain IDPs is "fuzzy" in that their binding and/or phase separation are stochastically governed…

Biomolecules · Quantitative Biology 2020-08-10 Alan N. Amin , Yi-Hsuan Lin , Suman Das , Hue Sun Chan

We consider iterated functions systems (IFS) on compact metric spaces and introduce the concept of target sets. Such sets have very rich dynamical properties and play a similar role as semifractals introduced by Lasota and Myjak do for…

Dynamical Systems · Mathematics 2018-08-31 Lorenzo J. Díaz , Edgar Matias

By expressing prior distributions as general stochastic processes, nonparametric Bayesian methods provide a flexible way to incorporate prior knowledge and constrain the latent structure in statistical inference. The Indian buffet process…

Machine Learning · Statistics 2015-05-21 Mengjie Chen , Chao Gao , Hongyu Zhao

Deep learning models have achieved state-of-the-art performance in many classification tasks. However, most of them cannot provide an interpretation for their classification results. Machine learning models that are interpretable are…

Machine Learning · Computer Science 2021-11-04 Miles Q. Li , Benjamin C. M. Fung , Adel Abusitta

Deterministic database systems have received increasing attention from the database research community in recent years. Despite their current limitations, recent proposals of distributed deterministic transaction processing systems…

Databases · Computer Science 2021-07-26 Thamir M. Qadah , Mohammad Sadoghi

Neural Processes (NPs), and specifically Transformer Neural Processes (TNPs), have demonstrated remarkable performance across tasks ranging from spatiotemporal forecasting to tabular data modelling. However, many of these applications are…

Machine Learning · Computer Science 2026-02-24 Philip Mortimer , Cristiana Diaconu , Tommy Rochussen , Bruno Mlodozeniec , Richard E. Turner

Dynamic prediction, which typically refers to the prediction of future outcomes using historical records, is often of interest in biomedical research. For datasets with large sample sizes, high measurement density, and complex correlation…

Methodology · Statistics 2024-12-04 Ying Jin , Andrew Leroux

Motivated by recently emerging problems in machine learning and statistics, we propose data models which relax the familiar i.i.d. assumption. In essence, we seek to understand what it means for data to come from a set of probability…

Statistics Theory · Mathematics 2025-01-08 Christian Fröhlich , Robert C. Williamson

Transactional frequent subgraph mining identifies frequent subgraphs in a collection of graphs. This research problem has wide applicability and increasingly requires higher scalability over single machine solutions to address the needs of…

Databases · Computer Science 2017-03-07 André Petermann , Martin Junghanns , Erhard Rahm

Frequent pattern (itemset) mining in transactional databases is one of the most well-studied problems in data mining. One obstacle that limits the practical usage of frequent pattern mining is the extremely large number of patterns…

Databases · Computer Science 2007-05-23 Zengyou He

Systems biology relies on mathematical models that often involve complex and intractable likelihood functions, posing challenges for efficient inference and model selection. Generative models, such as normalizing flows, have shown…

Quantitative Methods · Quantitative Biology 2023-12-06 Vincent D. Zaballa , Elliot E. Hui

Recently much attention has been paid to deep generative models, since they have been used to great success for variational inference, generation of complex data types, and more. In most all of these settings, the goal has been to find a…

Machine Learning · Statistics 2019-03-19 Sean R. Bittner , John P. Cunningham

Matrix factorisation methods decompose multivariate observations as linear combinations of latent feature vectors. The Indian Buffet Process (IBP) provides a way to model the number of latent features required for a good approximation in…

Machine Learning · Statistics 2017-04-14 Matthew C. Pearce , Simon R. White

Big time series are increasingly available from an ever wider range of IoT-enabled sensors deployed in various environments. Significant insights can be gained by mining temporal patterns from these time series. Temporal pattern mining…

Databases · Computer Science 2023-06-21 Van Long Ho , Nguyen Ho , Torben Bach Pedersen , Panagiotis Papapetrou

We propose unifying techniques from probabilistic databases and relational embedding models with the goal of performing complex queries on incomplete and uncertain data. We formalize a probabilistic database model with respect to which all…

Artificial Intelligence · Computer Science 2020-06-30 Tal Friedman , Guy Van den Broeck

Parameter learning for high-dimensional, partially observed, and nonlinear stochastic processes is a methodological challenge. Spatiotemporal disease transmission systems provide examples of such processes giving rise to open inference…

Machine Learning · Statistics 2023-04-05 Ning Ning , Edward L. Ionides

In binary-transaction data-mining, traditional frequent itemset mining often produces results which are not straightforward to interpret. To overcome this problem, probability models are often used to produce more compact and conclusive…

Machine Learning · Computer Science 2012-09-27 Ruefei He , Jonathan Shapiro

Different mathematical models of recognition processes are known. In the present paper we consider a pattern recognition algorithm as an oracle computation on a Turing machine. Such point of view seems to be useful in pattern recognition as…

Computational Complexity · Computer Science 2007-05-23 Vadim Bulitko

Itemset mining has been an active area of research due to its successful application in various data mining scenarios including finding association rules. Though most of the past work has been on finding frequent itemsets, infrequent…

Databases · Computer Science 2012-07-23 Ashish Gupta , Akshay Mittal , Arnab Bhattacharya

An ideal outcome of pattern mining is a small set of informative patterns, containing no redundancy or noise, that identifies the key structure of the data at hand. Standard frequent pattern miners do not achieve this goal, as due to the…

Data Structures and Algorithms · Computer Science 2019-02-11 Nikolaj Tatti , Jilles Vreeken