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Similarity search is one of the most fundamental computations that are regularly performed on ever-increasing protein datasets. Scalability is of paramount importance for uncovering novel phenomena that occur at very large scales. We…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-03-06 Oguz Selvitopi , Saliya Ekanayake , Giulia Guidi , Muaaz G. Awan , Georgios A. Pavlopoulos , Ariful Azad , Nikos Kyrpides , Leonid Oliker , Katherine Yelick , Aydın Buluç

Computing lower and upper bounds on the competitive ratio of online algorithms is a challenging question: For a minimization combinatorial problem, proving a competitive ratio for a given algorithm leads to an upper bound. However computing…

Computer Science and Game Theory · Computer Science 2022-12-19 Antoine Lhomme , Olivier Romane , Nicolas Catusse , Nadia Brauner

In the recent years, branch-and-cut algorithms have been the target of data-driven approaches designed to enhance the decision making in different phases of the algorithm such as branching, or the choice of cutting planes (cuts). In…

Optimization and Control · Mathematics 2025-06-03 Sammy Khalife , Andrea Lodi

We revisit the well-known problem of sorting under partial information: sort a finite set given the outcomes of comparisons between some pairs of elements. The input is a partially ordered set P, and solving the problem amounts to…

Data Structures and Algorithms · Computer Science 2013-01-22 Jean Cardinal , Samuel Fiorini , Gwenaël Joret , Raphaël Jungers , J. Ian Munro

We consider the problem of sampling $n$ numbers from the range $\{1,\ldots,N\}$ without replacement on modern architectures. The main result is a simple divide-and-conquer scheme that makes sequential algorithms more cache efficient and…

Data Structures and Algorithms · Computer Science 2019-11-18 Peter Sanders , Sebastian Lamm , Lorenz Hübschle-Schneider , Emanuel Schrade , Carsten Dachsbacher

Graph processing is typically considered to be a memory-bound rather than compute-bound problem. One common line of thought is that more available memory bandwidth corresponds to better graph processing performance. However, in this work we…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-10-10 Oded Green , James Fox , Jeffrey Young , Jun Shirako , David Bader

As deep learning models continue to increase in size, the memory requirements for training have surged. While high-level techniques like offloading, recomputation, and compression can alleviate memory pressure, they also introduce…

Machine Learning · Computer Science 2023-10-31 Huiyao Shu , Ang Wang , Ziji Shi , Hanyu Zhao , Yong Li , Lu Lu

A "bigger is better" explosion in the number of parameters in deep neural networks has made it increasingly challenging to make state-of-the-art networks accessible in compute-restricted environments. Compression techniques have taken on…

Computation and Language · Computer Science 2021-10-08 Orevaoghene Ahia , Julia Kreutzer , Sara Hooker

Memory networks are neural networks with an explicit memory component that can be both read and written to by the network. The memory is often addressed in a soft way using a softmax function, making end-to-end training with backpropagation…

Machine Learning · Statistics 2016-05-25 Sarath Chandar , Sungjin Ahn , Hugo Larochelle , Pascal Vincent , Gerald Tesauro , Yoshua Bengio

The vast amounts of data used in social, business or traffic networks, biology and other natural sciences are often managed in graph-based data sets, consisting of a few thousand up to billions and trillions of vertices and edges,…

Databases · Computer Science 2021-10-22 Matthias Hauck , Ismail Oukid , Holger Fröning

Small distributed systems are limited by their main memory to generate massively large graphs. Trivial extension to current graph generators to utilize external memory leads to large amount of random I/O hence do not scale with size. In…

Databases · Computer Science 2012-10-02 Sandeep Gupta

Curating, processing, and combining large-scale medical imaging datasets from national studies is a non-trivial task due to the intense computation and data throughput required, variability of acquired data, and associated financial…

Many problems on data streams have been studied at two extremes of difficulty: either allowing randomized algorithms, in the static setting (where they should err with bounded probability on the worst case stream); or when only…

Data Structures and Algorithms · Computer Science 2022-11-11 Manuel Stoeckl

We consider the dictionary problem in external memory and improve the update time of the well-known buffer tree by roughly a logarithmic factor. For any \lambda >= max {lg lg n, log_{M/B} (n/B)}, we can support updates in time O(\lambda /…

Data Structures and Algorithms · Computer Science 2011-04-15 John Iacono , Mihai Pǎtraşcu

Stream processing is usually done either on a tuple-by-tuple basis or in micro-batches. There are many applications where tuples over a predefined duration/window must be processed within certain deadlines. Processing such queries using…

Databases · Computer Science 2024-09-23 Saranya Chandrasekaran , S. Sudarshan

Sorting and binary searching a dense array can be considered the simplest and most space efficient form of indexing. This holds especially on GPUs as they exhibit exceptional sorting performance. However, the popular opinion is that such a…

Databases · Computer Science 2026-02-24 Justus Henneberg , Felix Schuhknecht

Traffic splitting is a required functionality in networks, for example for load balancing over paths or servers, or by the source's access restrictions. The capacities of the servers (or the number of users with particular access…

Networking and Internet Architecture · Computer Science 2022-12-27 Yaniv Sadeh , Ori Rottenstreich , Haim Kaplan

Large language models (LLMs) tend to externalize their reasoning in their chain of thought, making the chain of thought a good target for monitoring. This is partially an inherent feature of the Transformer architecture: sufficiently long…

Artificial Intelligence · Computer Science 2026-03-11 Jonah Brown-Cohen , David Lindner , Rohin Shah

We study the query complexity of Bayesian Private Learning: a learner wishes to locate a random target within an interval by submitting queries, in the presence of an adversary who observes all of her queries but not the responses. How many…

Machine Learning · Computer Science 2019-11-19 Kuang Xu

Modern scientific instruments generate data at rates that increasingly exceed local compute capabilities and, when paired with the staging and I/O overheads of file-based transfers, also render file-based use of remote HPC resources…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-10-01 Flavio Castro , Weijian Zheng , Joaquin Chung , Ian Foster , Rajkumar Kettimuthu