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Adaptation to changing environments is a universal feature of life and can involve the organism modifying itself in response to the environment as well as actively modifying the environment to control selection pressures. The latter case…

Populations and Evolution · Quantitative Biology 2023-01-10 Edward D. Lee , Jessica C. Flack , David C. Krakauer

Log-Structured Merge-trees (LSM-trees) have been widely used in modern NoSQL systems. Due to their out-of-place update design, LSM-trees have introduced memory walls among the memory components of multiple LSM-trees and between the write…

Databases · Computer Science 2020-07-16 Chen Luo , Michael J. Carey

This article focuses on properties and structures of trees with maximum mean subtree order in a given family; such trees are called optimal in the family. Our main goal is to describe the structure of optimal trees in $\mathcal{T}_n$ and…

Combinatorics · Mathematics 2018-11-16 Lucas Mol , Ortrud R. Oellermann

Small distributed systems are limited by their main memory to generate massively large graphs. Trivial extension to current graph generators to utilize external memory leads to large amount of random I/O hence do not scale with size. In…

Databases · Computer Science 2012-10-02 Sandeep Gupta

The maximum/minimum bisection problems are, given an edge-weighted graph, to find a bipartition of the vertex set into two sets whose sizes differ by at most one, such that the total weight of edges between the two sets is…

Data Structures and Algorithms · Computer Science 2020-09-17 Tesshu Hanaka , Yasuaki Kobayashi , Taiga Sone

We consider the problem of geographically distributed data storage in a network of servers (or nodes) where the nodes are connected to each other via communication links having certain round-trip times (RTTs). Each node serves a specific…

Information Theory · Computer Science 2024-05-14 Srivathsa Acharya , P. Vijay Kumar , Viveck R. Cadambe

Motivated by an application in computational topology, we consider a novel variant of the problem of efficiently maintaining dynamic rooted trees. This variant requires merging two paths in a single operation. In contrast to the standard…

Data Structures and Algorithms · Computer Science 2007-11-13 Loukas Georgiadis , Haim Kaplan , Nira Shafrir , Robert E. Tarjan , Renato F. Werneck

We study the problem of finding and monitoring fixed-size subgraphs in a continually changing large-scale graph. We present the first approach that (i) performs worst-case optimal computation and communication, (ii) maintains a total memory…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-02-13 Khaled Ammar , Frank McSherry , Semih Salihoglu , Manas Joglekar

In this paper we study several problems concerning the number of homomorphisms of trees. We give an algorithm for the number of homomorphisms from a tree to any graph by the Transfer-matrix method. By using this algorithm and some…

Combinatorics · Mathematics 2013-07-26 Péter Csikvári , Zhicong Lin

We consider a variant of the prize collecting Steiner tree problem in which we are given a \emph{directed graph} $D=(V,A)$, a monotone submodular prize function $p:2^V \rightarrow \mathbb{R}^+ \cup \{0\}$, a cost function $c:V \rightarrow…

Data Structures and Algorithms · Computer Science 2022-10-04 Gianlorenzo D'Angelo , Esmaeil Delfaraz , Hugo Gilbert

A problem that arises in drawings of transportation networks is to minimize the number of crossings between different transportation lines. While this can be done efficiently under specific constraints, not all solutions are visually…

Data Structures and Algorithms · Computer Science 2013-06-25 Martin Fink , Sergey Pupyrev

Random forests and, more generally, (decision\nobreakdash-)tree ensembles are widely used methods for classification and regression. Recent algorithmic advances allow to compute decision trees that are optimal for various measures such as…

Machine Learning · Computer Science 2024-09-25 Christian Komusiewicz , Pascal Kunz , Frank Sommer , Manuel Sorge

A matrix $M: A \times X \rightarrow \{-1,1\}$ corresponds to the following learning problem: An unknown element $x \in X$ is chosen uniformly at random. A learner tries to learn $x$ from a stream of samples, $(a_1, b_1), (a_2, b_2) \ldots$,…

Machine Learning · Computer Science 2017-08-10 Sumegha Garg , Ran Raz , Avishay Tal

We present time-space trade-offs for computing the Euclidean minimum spanning tree of a set $S$ of $n$ point-sites in the plane. More precisely, we assume that $S$ resides in a random-access memory that can only be read. The edges of the…

Computational Geometry · Computer Science 2021-02-03 Bahareh Banyassady , Luis Barba , Wolfgang Mulzer

Small devices collecting data for agricultural, environmental, and industrial monitoring enable Internet of Things (IoT) applications. Given their critical role in data collection, there is a need for optimizations to improve on-device data…

Databases · Computer Science 2026-03-09 Nadir Ould-Khessal , Scott Fazackerley , Ramon Lawrence

Many decisions involve choosing an uncertain course of actions in deep and wide decision trees, as when we plan to visit an exotic country for vacation. In these cases, exhaustive search for the best sequence of actions is not tractable due…

Machine Learning · Statistics 2021-04-14 Ruben Moreno-Bote , Chiara Mastrogiuseppe

The structure of networks that provide optimal transport properties has been investigated in a variety of contexts. While many different formulations of this problem have been considered, it is recurrently found that optimal networks are…

Biological Physics · Physics 2015-05-13 Francis Corson

We consider the classical problem of representing a collection of priority queues under the operations \Findmin{}, \Insert{}, \Decrease{}, \Meld{}, \Delete{}, and \Deletemin{}. In the comparison-based model, if the first four operations are…

Data Structures and Algorithms · Computer Science 2011-12-06 Amr Elmasry , Jyrki Katajainen

Predicting future events, and their order, is important for efficient planning. We propose a neural mechanism to non-destructively translate the current state of memory into the future, so as to construct an ordered set of future…

Neurons and Cognition · Quantitative Biology 2017-03-28 Karthik H. Shankar , Inder Singh , Marc W. Howard

One of the primary sources of unpredictability in modern multi-core embedded systems is contention over shared memory resources, such as caches, interconnects, and DRAM. Despite significant achievements in the design and analysis of…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-09-18 Ankit Agrawal , Renato Mancuso , Rodolfo Pellizzoni , Gerhard Fohler
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