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We focus on two central themes in this dissertation. The first one is on decomposing polytopes and polynomials in ways that allow us to perform nonlinear optimization. We start off by explaining important results on decomposing a polytope…
In this paper, a new general decomposition theory inspired from modular graph decomposition is presented. Our main result shows that, within this general theory, most of the nice algorithmic tools developed for modular decomposition are…
Submodular function minimization is a fundamental optimization problem that arises in several applications in machine learning and computer vision. The problem is known to be solvable in polynomial time, but general purpose algorithms have…
The scalability of submodular optimization methods is critical for their usability in practice. In this paper, we study the reducibility of submodular functions, a property that enables us to reduce the solution space of submodular…
We propose a notion of minimal free resolutions for differential modules, and we prove existence and uniqueness results for such resolutions. We also take the first steps toward studying the structure of minimal free resolutions of…
This is a survey on the usage of the module theoretic notion of a "retractable module" in the study of algebras with actions. We explain how classical results can be interpreted using module theory and end the paper with some open…
This paper addresses the decomposition of biochemical networks into functional modules that preserve their dynamic properties upon interconnection with other modules, which permits the inference of network behavior from the properties of…
Denoising, the process of reducing random fluctuations in a signal to emphasize essential patterns, has been a fundamental problem of interest since the dawn of modern scientific inquiry. Recent denoising techniques, particularly in…
Module extraction - the task of computing a (preferably small) fragment M of an ontology T that preserves entailments over a signature S - has found many applications in recent years. Extracting modules of minimal size is, however,…
An algebraic deformation theory of module-algebras over a bialgebra is constructed. The cases of module-coalgebras, comodule-algebras, and comodule-coalgebras are also considered.
To understand the structure of a large-scale biological, social, or technological network, it can be helpful to decompose the network into smaller subunits or modules. In this article, we develop an information-theoretic foundation for the…
This paper presents the foundation for a decomposition theory for Boolean networks, a type of discrete dynamical system that has found a wide range of applications in the life sciences, engineering, and physics. Given a Boolean network…
The aim of this work is to reduce the complexity of the available algorithms for computing the generator sets of a semigroup ideal by using the Hermite normal form. In order to achieve it we introduce the concept of decomposable semigroup.…
Submodular functions are at the core of many machine learning and data mining tasks. The underlying submodular functions for many of these tasks are decomposable, i.e., they are sum of several simple submodular functions. In many data…
In Finite Group Modular Representation Theory, the basic objects are the indecomposable and simple modules. This paper offers a new classification of these objects that refines the Green Theory Classification of indecomposable and simple…
Dey and Xin (J.Appl.Comput.Top., 2022, arXiv:1904.03766) describe an algorithm to decompose finitely presented multiparameter persistence modules using a matrix reduction algorithm. Their algorithm only works for modules whose generators…
This paper describes a way to improve the scalability of program synthesis by exploiting modularity: larger programs are synthesized from smaller programs. The key issue is to make each "larger-created-from-smaller" synthesis sub-problem be…
We develop a notion of cell decomposition suitable for studying weak p- adic structures (reducts of p-adic fields where addition and multiplication are not (everywhere) definable). As an example, we apply this to a language with restricted…
In this paper, we introduce the notion of the core-EP decomposition and some of its properties. By using the decomposition, we derive several characterizations of the core-EP inverse, introduce a pre-order(i.e. the core-EP order) and a…
Many combinatorial problems arising in machine learning can be reduced to the problem of minimizing a submodular function. Submodular functions are a natural discrete analog of convex functions, and can be minimized in strongly polynomial…