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A new parallel computing framework has been developed to use with general-purpose radiation transport codes. The framework was implemented as a C++ module that uses MPI for message passing. The module is significantly independent of…

Accelerator Physics · Physics 2012-02-13 M. A. Kostin , N. V. Mokhov , K. Niita

Mode Division Multiplexing (MDM) is a technique used over the past decade in Silicon Photonics (SiPh) to incorporate more data into communication links by employing higher-order transverse electric or transverse magnetic modes. MDM was…

An overview of computational methods to describe high-dimensional potential energy surfaces suitable for atomistic simulations is given. Particular emphasis is put on accuracy, computability, transferability and extensibility of the methods…

Chemical Physics · Physics 2020-07-08 Oliver T. Unke , Debasish Koner , Sarbani Patra , Silvan Käser , Markus Meuwly

The digitization of the world has also led to a digitization of communication processes. Traditional research methods fall short in understanding communication in digital worlds as the scope has become too large in volume, variety, and…

Computers and Society · Computer Science 2020-01-03 André Calero Valdez , Lena Adam , Dennis Assenmacher , Laura Burbach , Malte Bonart , Lena Frischlich , Philipp Schaer

In the proceedings of this, and of several recent close binary conferences, there have been several contributions describing smoothed particle hydrodynamics simulations of accretion disks. It is apposite therefore to review the numerical…

Astrophysics · Physics 2007-05-23 J. R. Murray , M. R. Truss , S. B. Foulkes , C. A. Haswell , K. Manson

Progress in the atomic-scale modelling of matter over the past decade has been tremendous. This progress has been brought about by improvements in methods for evaluating interatomic forces that work by either solving the electronic…

This paper presents our work on developing parallel computational methods for two-phase flow on modern parallel computers, where techniques for linear solvers and nonlinear methods are studied and the standard and inexact Newton methods are…

Computational Engineering, Finance, and Science · Computer Science 2017-01-24 Hui Liu , Lihua Shen , Yan Chen , Kun Wang , Bo Yang , Zhangxin Chen

We consider concepts centered around modal analysis, data science, network science, and machine learning to reveal the essential dynamics from high-dimensional fluid flow data and operators. The presentation of the material herein is…

Fluid Dynamics · Physics 2019-03-06 Kunihiko Taira

Molecular Property Prediction (MPP) plays a pivotal role across diverse domains, spanning drug discovery, material science, and environmental chemistry. Fueled by the exponential growth of chemical data and the evolution of artificial…

Machine Learning · Computer Science 2024-08-23 Tanya Liyaqat , Tanvir Ahmad , Chandni Saxena

MPI derived datatypes are an abstraction that simplifies handling of non-contiguous data in MPI applications. These datatypes are recursively constructed at runtime from primitive Named Types defined in the MPI standard. More recently, the…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-04-22 Carl Pearson , Kun Wu , I-Hsin Chung , Jinjun Xiong , Wen-Mei Hwu

Network library APIs have historically been developed with the emphasis on data movement, placement, and communication semantics. Many communication semantics are available across a large variety of network libraries, such as send-receive,…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-06-02 Luis E. Peña , Wenbin Lu , Pavel Shamis , Steve Poole

Computational fluid dynamics (CFD) requires a vast amount of compute cycles on contemporary large-scale parallel computers. Hence, performance optimization is a pivotal activity in this field of computational science. Not only does it…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-12-24 M. Wittmann , T. Zeiser , G. Hager , G. Wellein

Advances in detectors and computational technologies provide new opportunities for applied research and the fundamental sciences. Concurrently, dramatic increases in the three Vs (Volume, Velocity, and Variety) of experimental data and the…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-05-15 Nikolay Malitsky , Aashish Chaudhary , Sebastien Jourdain , Matt Cowan , Patrick O'Leary , Marcus Hanwell , Kerstin Kleese Van Dam

In this relation I present a technique of construction and fast evaluation of a family of cubic polynomials for analytic smoothing and graphical rendering of particles trajectories for flows in a generic geometry. The principal result of…

Numerical Analysis · Mathematics 2025-10-20 Gianluca Argentini

Recent progress in artificial intelligence (AI) and high-performance computing (HPC) have brought potentially game-changing opportunities in accelerating reactive flow simulations. In this study, we introduce an open-source computational…

Computational Engineering, Finance, and Science · Computer Science 2023-12-22 Runze Mao , Yingrui Wang , Min Zhang , Han Li , Jiayang Xu , Xinyu Dong , Yan Zhang , Zhi X. Chen

Molecular dynamics simulations are a powerful tool to study diffusion processes in battery electrolyte and electrode materials. From a single molecular dynamics simulation many properties relevant to diffusion can be obtained, including the…

Chemical Physics · Physics 2018-07-09 Niek J. J. de Klerk , Eveline van der Maas , Marnix Wagemaker

We present a new scalable algorithm for short-range molecular dynamics simulations on distributed memory MIMD multicomputer based on a message-passing multi-cell approach. We have implemented the algorithm on the Connection Machine 5 (CM-5)…

comp-gas · Physics 2008-02-03 D. M. Beazley , P. S. Lomdahl

Particle-in-Cell (PIC) Monte Carlo (MC) simulations are central to plasma physics but face increasing challenges on heterogeneous HPC systems due to excessive data movement, synchronization overheads, and inefficient utilization of multiple…

Upcoming HPC clusters will feature hybrid memories and storage devices per compute node. In this work, we propose to use the MPI one-sided communication model and MPI windows as unique interface for programming memory and storage. We…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-10-10 Sergio Rivas-Gomez , Roberto Gioiosa , Ivy Bo Peng , Gokcen Kestor , Sai Narasimhamurthy , Erwin Laure , Stefano Markidis

We present a multiparticle collision dynamics (MPC) implementation of layered immiscible fluids $A$ and $B$ of different shear viscosities separated by planar interfaces. The simulated flow profile for imposed steady shear motion and the…

Soft Condensed Matter · Physics 2021-09-07 Zihan Tan , Vania Calandrini , Jan K. G. Dhont , Gerhard Nägele , Roland G. Winkler
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