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Curation of biomedical knowledge bases (KBs) relies on extracting accurate multi-entity relational facts from the literature - a process that remains largely manual and expert-driven. An essential step in this workflow is retrieving…

Information Retrieval · Computer Science 2025-04-16 Xing David Wang , Ulf Leser

The amount of text that is generated every day is increasing dramatically. This tremendous volume of mostly unstructured text cannot be simply processed and perceived by computers. Therefore, efficient and effective techniques and…

Computation and Language · Computer Science 2017-07-31 Mehdi Allahyari , Seyedamin Pouriyeh , Mehdi Assefi , Saied Safaei , Elizabeth D. Trippe , Juan B. Gutierrez , Krys Kochut

Objective: This study aims to review the recent advances in community challenges for biomedical text mining in China. Methods: We collected information of evaluation tasks released in community challenges of biomedical text mining,…

Artificial Intelligence · Computer Science 2024-09-02 Hui Zong , Rongrong Wu , Jiaxue Cha , Weizhe Feng , Erman Wu , Jiakun Li , Aibin Shao , Liang Tao , Zuofeng Li , Buzhou Tang , Bairong Shen

In the implementation and use of research information systems (RIS) in scientific institutions, text data mining and semantic technologies are a key technology for the meaningful use of large amounts of data. It is not the collection of…

Digital Libraries · Computer Science 2018-12-12 Otmane Azeroual , Gunter Saake , Mohammad Abuosba , Joachim Schöpfel

The amount of scientific papers published every day is daunting and constantly increasing. Keeping up with literature represents a challenge. If one wants to start exploring new topics it is hard to have a big picture without reading lots…

Information Retrieval · Computer Science 2020-11-10 Alberto Calderone

The scientific literature is growing exponentially, and professionals are no more able to cope with the current amount of publications. Text mining provided in the past methods to retrieve and extract information from text; however, most of…

Computation and Language · Computer Science 2019-02-27 Nikola Milosevic , Cassie Gregson , Robert Hernandez , Goran Nenadic

Biomedical knowledge is growing in an astounding pace with a majority of this knowledge is represented as scientific publications. Text mining tools and methods represents automatic approaches for extracting hidden patterns and trends from…

Information Retrieval · Computer Science 2026-03-03 Balu Bhasuran , Gurusamy Murugesan , Jeyakumar Natarajan

Machine Learning (ML) has garnered considerable attention from researchers and practitioners as a new and adaptable tool for disease diagnosis. With the advancement of ML and the proliferation of papers and research in this field, a…

Machine Learning · Computer Science 2022-01-11 Md Manjurul Ahsan , Zahed Siddique

While text mining and NLP research has been established for decades, there remain gaps in the literature that reports the use of these techniques in building real-world applications. For example, they typically look at single and sometimes…

Computation and Language · Computer Science 2023-01-10 Ziqi Zhang , Tomas Jasaitis , Richard Freeman , Rowida Alfrjani , Adam Funk

Text mining methods are used for a wide range of Software Engineering (SE) tasks. The biggest challenge of text mining is high dimensional data, i.e., a corpus of documents can contain $10^4$ to $10^6$ unique words. To address this…

Software Engineering · Computer Science 2018-05-01 Amritanshu Agrawal , Huy Tu , Tim Menzies

Objective: We aim to learn potential novel cures for diseases from unstructured text sources. More specifically, we seek to extract drug-disease pairs of potential cures to diseases by a simple reasoning over the structure of spoken text.…

Information Retrieval · Computer Science 2020-11-17 Rahul Yedida , Saad Mohammad Abrar , Cleber Melo-Filho , Eugene Muratov , Rada Chirkova , Alexander Tropsha

Data mining is one of the most important steps of the knowledge discovery in databases process and is considered as significant subfield in knowledge management. Research in data mining continues growing in business and in learning…

Databases · Computer Science 2012-10-11 Tipawan Silwattananusarn , Kulthida Tuamsuk

We use commercially available text analysis technology to process interview text data from a computational social science study. We find that topical clustering and terminological enrichment provide for convenient exploration and…

Computation and Language · Computer Science 2020-12-01 Jussi Karlgren , Renee Li , Eva M Meyersson Milgrom

Citation analysis is one of the most frequently used methods in research evaluation. We are seeing significant growth in citation analysis through bibliometric metadata, primarily due to the availability of citation databases such as the…

Digital Libraries · Computer Science 2020-09-01 Sehrish Iqbal , Saeed-Ul Hassan , Naif Radi Aljohani , Salem Alelyani , Raheel Nawaz , Lutz Bornmann

Clinical trial records are variable resources or the analysis of patients and diseases. Information extraction from free text such as eligibility criteria and summary of results and conclusions in clinical trials would better support…

Computation and Language · Computer Science 2020-01-01 Yingcheng Sun , Kenneth Loparo

The Covid-19 pandemic has caused a spur in the medical research literature. With new research advances in understanding the virus, there is a need for robust text mining tools which can process, extract and present answers from the…

Information Retrieval · Computer Science 2021-08-04 Souvik Das , Sougata Saha , Rohini K. Srihari

Data augmentation, the artificial creation of training data for machine learning by transformations, is a widely studied research field across machine learning disciplines. While it is useful for increasing a model's generalization…

Computation and Language · Computer Science 2022-09-09 Markus Bayer , Marc-André Kaufhold , Christian Reuter

With the proliferation of research means and computational methodologies, published biomedical literature is growing exponentially in numbers and volume. Cancer cell lines are frequently used models in biological and medical research that…

Computation and Language · Computer Science 2024-02-13 Ellery Smith , Rahel Paloots , Dimitris Giagkos , Michael Baudis , Kurt Stockinger

Text mining approaches are being used increasingly for business analytics. In particular, such approaches are now central to understanding users' feedback regarding systems delivered via online application distribution platforms such as…

Software Engineering · Computer Science 2021-03-30 Chan Won Lee , Sherlock A. Licorish , Bastin Tony Roy Savarimuthu , Stephen G. MacDonell

Text summarization is crucial for mitigating information overload across domains like journalism, medicine, and business. This research evaluates summarization performance across 17 large language models (OpenAI, Google, Anthropic,…

Computation and Language · Computer Science 2025-04-08 Anantharaman Janakiraman , Behnaz Ghoraani
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