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The recent super-exponential growth in the amount of sequencing data generated worldwide has put techniques for compressed storage into the focus. Most available solutions, however, are strictly tied to specific bioinformatics formats,…

Genomics · Quantitative Biology 2021-11-01 Łukasz Roguski , Paolo Ribeca

The movement of large-scale (tens of Terabytes and larger) data sets between high performance computing (HPC) facilities is an important and increasingly critical capability. A growing number of scientific collaborations rely on HPC…

Clustering is an essential data mining tool for analyzing and grouping similar objects. In big data applications, however, many clustering algorithms are infeasible due to their high memory requirements and/or unfavorable runtime…

Data Structures and Algorithms · Computer Science 2026-01-27 Gregor Ulm , Simon Smith , Adrian Nilsson , Emil Gustavsson , Mats Jirstrand

The XRootD system is used to transfer, store, and cache large datasets from high-energy physics (HEP). In this study we focus on its capability as distributed on-demand storage cache. Through exploring a large set of daily log files between…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-05-12 Julian Bellavita , Alex Sim , Kesheng Wu , Inder Monga , Chin Guok , Frank Würthwein , Diego Davila

There has been a significant societal push towards sustainable practices, including in computing. Modern interactive workloads such as geo-distributed web-services exhibit various spatiotemporal and performance flexibility, enabling the…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-03-25 Abel Souza , Shruti Jasoria , Basundhara Chakrabarty , Alexander Bridgwater , Axel Lundberg , Filip Skogh , Ahmed Ali-Eldin , David Irwin , Prashant Shenoy

Building and deploying software on high-end computing systems is a challenging task. High performance applications have to reliably run across multiple platforms and environments, and make use of site-specific resources while resolving…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-04-12 Lucas Benedicic , Felipe A. Cruz , Alberto Madonna , Kean Mariotti

Transmission Expansion Planning (TEP) is the process of optimizing the development and upgrade of the power grid to ensure reliable, efficient, and cost-effective electricity delivery while addressing grid constraints. To support growing…

Systems and Control · Electrical Eng. & Systems 2024-12-06 Kevin Wu , Rabab Haider , Pascal Van Hentenryck

The data volumes stored in telescope archives is constantly increasing due to the development and improvements in the instrumentation. Often the archives need to be stored over a distributed storage architecture, provided by independent…

Instrumentation and Methods for Astrophysics · Physics 2022-02-07 Y. G. Grange , V. N. Pandey , X. Espinal , R. Di Maria , A. P. Millar

Millions of sensors, mobile applications and machines now generate billions of events. Specialized many-core key-value stores (KVSs) can ingest and index these events at high rates (over 100 Mops/s on one machine) if events are generated on…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-04-29 Chinmay Kulkarni , Badrish Chandramouli , Ryan Stutsman

The Lustre parallel file system has been widely adopted by high-performance computing (HPC) centers as an effective system for managing large-scale storage resources. Lustre achieves unprecedented aggregate performance by parallelizing I/O…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-06-18 Neena Imam , Michael Brim , Sarp Oral

Over the next ten years, the physics reach of the Large Hadron Collider (LHC) at the European Organization for Nuclear Research (CERN) will be greatly extended through increases in the instantaneous luminosity of the accelerator and large…

High Energy Physics - Experiment · Physics 2013-08-13 Peter Elmer , Salvatore Rappoccio , Kevin Stenson , Peter Wittich

This paper discusses the CRISTAL object lifecycle management system and its use in provenance data management and the traceability of system events. This software was initially used to capture the construction and calibration of the CMS…

Software Engineering · Computer Science 2015-06-18 Jetendr Shamdasani , Andrew Branson , Richard McClatchey

We present a novel architecture for sparse pattern processing, using flash storage with embedded accelerators. Sparse pattern processing on large data sets is the essence of applications such as document search, natural language processing,…

Hardware Architecture · Computer Science 2017-01-25 Sang-Woo Jun , Huy T. Nguyen , Vijay N. Gadepally , Arvind

Deep Learning system architects strive to design a balanced system where the computational accelerator -- FPGA, GPU, etc, is not starved for data. Feeding training data fast enough to effectively keep the accelerator utilization high is…

Performance · Computer Science 2018-12-04 Christian Pinto , Yiannis Gkoufas , Andrea Reale , Seetharami Seelam , Steven Eliuk

Terrestrial data centers suffer from a growing carbon footprint that could contribute with $14\%$ to global CO2 emissions by 2040. High Altitude Platform (HAP) is a promising airborne technology that can unleash the computing frontier in…

Systems and Control · Electrical Eng. & Systems 2023-05-09 Wiem Abderrahim , Osama Amin , Basem Shihada

As a part of the IRIS-HEP "Analysis Grand Challenge" activities, the Coffea-casa AF team executed a "200 Gbps Challenge". One of the goals of this challenge was to provide a setup for execution of a test notebook-style analysis on the…

Exploratory data analysis tools must respond quickly to a user's questions, so that the answer to one question (e.g. a visualized histogram or fit) can influence the next. In some SQL-based query systems used in industry, even very large…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-11-09 Jim Pivarski , David Lange , Thanat Jatuphattharachat

The CMS experiment heavily relies on the CMSWEB cluster to host critical services for its operational needs. The cluster is deployed on virtual machines (VMs) from the CERN OpenStack cloud and is manually maintained by operators and…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-05-31 Muhammad Imran , Valentin Kuznetsov , Lina Marcella , Katarzyna Maria Dziedziniewicz-Wojcik , Andreas Pfeiffer , Panos Paparrigopoulos

This report evaluates the new analytical capabilities of DataStax Enterprise (DSE) [1] through the use of standard Hadoop workloads. In particular, we run experiments with CPU and I/O bound micro-benchmarks as well as OLAP-style analytical…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-12-17 Todor Ivanov , Raik Niemann , Sead Izberovic , Marten Rosselli , Karsten Tolle , Roberto V. Zicari

The storage stack in the traditional operating system is primarily optimized towards improving the CPU utilization and hiding the long I/O latency imposed by the slow I/O devices such as hard disk drivers (HDDs). However, the emerging…

Operating Systems · Computer Science 2023-06-21 Junzhe Li , Xiurui Pan , Shushu Yi , Jie Zhang