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To cluster sequences given only their read-set representations, one may try to reconstruct each one from the corresponding read set, and then employ conventional (dis)similarity measures such as the edit distance on the assembled sequences.…

Data Structures and Algorithms · Computer Science 2017-05-18 Petr Ryšavý , Filip Železný

Short text clustering is a challenging task due to the lack of signal contained in such short texts. In this work, we propose iterative classification as a method to b o ost the clustering quality (e.g., accuracy) of short texts. Given a…

Information Retrieval · Computer Science 2020-02-03 Md Rashadul Hasan Rakib , Norbert Zeh , Magdalena Jankowska , Evangelos Milios

Hierarchical clustering is a widely used method for unsupervised learning with numerous applications. However, in the application of modern algorithms, the datasets studied are usually large and dynamic. If the hierarchical clustering is…

Machine Learning · Computer Science 2025-07-15 Shijie Li , Weiqiang He , Ruobing Bai , Pan Peng

Clustering algorithms aim to organize data into groups or clusters based on the inherent patterns and similarities within the data. They play an important role in today's life, such as in marketing and e-commerce, healthcare, data…

Machine Learning · Computer Science 2024-01-17 Hui Yin , Amir Aryani , Stephen Petrie , Aishwarya Nambissan , Aland Astudillo , Shengyuan Cao

We study supervised learning problems using clustering constraints to impose structure on either features or samples, seeking to help both prediction and interpretation. The problem of clustering features arises naturally in text…

Machine Learning · Computer Science 2016-09-20 Vincent Roulet , Fajwel Fogel , Alexandre d'Aspremont , Francis Bach

Connected clustering denotes a family of constrained clustering problems in which we are given a distance metric and an undirected connectivity graph $G$ that can be completely unrelated to the metric. The aim is to partition the $n$…

Data Structures and Algorithms · Computer Science 2025-11-25 Jan Eube , Heiko Röglin

Clustering high-dimensional data is a critical challenge in machine learning due to the curse of dimensionality and the presence of noise. Traditional clustering algorithms often fail to capture the intrinsic structures in such data. This…

Machine Learning · Computer Science 2025-03-21 Joanikij Chulev , Angela Mladenovska

The problem of constrained clustering has attracted significant attention in the past decades. In this paper, we study the balanced $k$-center, $k$-median, and $k$-means clustering problems where the size of each cluster is constrained by…

Computational Geometry · Computer Science 2018-09-11 Hu Ding

A natural approach to analyze interaction data of form "what-connects-to-what-when" is to create a time-series (or rather a sequence) of graphs through temporal discretization (bandwidth selection) and spatial discretization (vertex…

Machine Learning · Statistics 2015-01-13 Nam H. Lee , Carey Priebe , Youngser Park , I-Jeng Wang , Michael Rosen

Spectral clustering and its extensions usually consist of two steps: (1) constructing a graph and computing the relaxed solution; (2) discretizing relaxed solutions. Although the former has been extensively investigated, the discretization…

Machine Learning · Computer Science 2023-10-20 Hongyuan Zhang , Xuelong Li

The increasing pervasiveness of social media creates new opportunities to study human social behavior, while challenging our capability to analyze their massive data streams. One of the emerging tasks is to distinguish between different…

Social and Information Networks · Computer Science 2017-03-07 Emilio Ferrara , Mohsen JafariAsbagh , Onur Varol , Vahed Qazvinian , Filippo Menczer , Alessandro Flammini

Biclustering is a two way clustering approach involving simultaneous clustering along two dimensions of the data matrix. Finding biclusters of web objects (i.e. web users and web pages) is an emerging topic in the context of web usage…

Neural and Evolutionary Computing · Computer Science 2011-06-14 R. Rathipriya , Dr. K. Thangavel , J. Bagyamani

Edit distance, also known as Levenshtein distance, is an essential way to compare two strings that proved to be particularly useful in the analysis of genetic sequences and natural language processing. However, edit distance is a discrete…

Machine Learning · Computer Science 2019-04-30 Evgenii Ofitserov , Vasily Tsvetkov , Vadim Nazarov

In the last years many studies examined the consistency of students' answers in a variety of contexts. Some of these papers tried to develop more detailed models of the consistency of students' reasoning, or to subdivide a sample of…

Physics Education · Physics 2017-08-17 Onofrio Rosario Battaglia , Benedetto Di Paola , Claudio Fazio

K-means is one of the most widely used clustering algorithms in various disciplines, especially for large datasets. However the method is known to be highly sensitive to initial seed selection of cluster centers. K-means++ has been proposed…

Machine Learning · Computer Science 2016-04-19 Fouad Khan

Spherical k-Means is frequently used to cluster document collections because it performs reasonably well in many settings and is computationally efficient. However, the time complexity increases linearly with the number of clusters k, which…

Machine Learning · Computer Science 2021-08-03 Johannes Knittel , Steffen Koch , Thomas Ertl

Clustering is a fundamental tool in unsupervised learning, used to group objects by distinguishing between similar and dissimilar features of a given data set. One of the most common clustering algorithms is k-means. Unfortunately, when…

Machine Learning · Statistics 2021-08-17 Olga Dorabiala , J. Nathan Kutz , Aleksandr Aravkin

We introduce a new method for performing clustering with the aim of fitting clusters with different scatters and weights. It is designed by allowing to handle a proportion $\alpha$ of contaminating data to guarantee the robustness of the…

Statistics Theory · Mathematics 2008-12-18 Luis A. García-Escudero , Alfonso Gordaliza , Carlos Matrán , Agustin Mayo-Iscar

An appropriate distance metric is crucial for categorical data clustering, as the distance between categorical data cannot be directly calculated. However, the distances between attribute values usually vary in different clusters induced by…

Machine Learning · Computer Science 2026-03-09 Taixi Chen , Yiu-ming Cheung , Yiqun Zhang

Cluster number is typically a parameter selected at the outset in clustering problems, and while impactful, the choice can often be difficult to justify. Inspired by bioinformatics, this study examines how the nature of clusters varies with…

Machine Learning · Computer Science 2025-02-25 Justin Miller , Tristram Alexander