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Ontologies present an attractive technology for describing bio-medicine, because they can be shared, and have rich computational properties. However, they lack the rich expressivity of English and fit poorly with the current scientific…

Digital Libraries · Computer Science 2015-12-15 Phillip Lord , Jennifer Warrendar

In this study, we propose a structured methodology that utilizes large language models (LLMs) in a cost-efficient and parsimonious manner, integrating the strengths of scholars and machines while offsetting their respective weaknesses. Our…

Computation and Language · Computer Science 2025-12-30 Navid Asgari , Benjamin M. Cole

Ontological Knowledge Bases (OKBs) play a vital role in structuring domain-specific knowledge and serve as a foundation for effective knowledge management systems. However, their traditional manual development poses significant challenges…

Information Retrieval · Computer Science 2026-03-16 Le Ngoc Luyen , Marie-Hélène Abel , Philippe Gouspillou

Recently embedding-based retrieval or dense retrieval have shown state of the art results, compared with traditional sparse or bag-of-words based approaches. This paper introduces a model-agnostic doc-level embedding framework through large…

Information Retrieval · Computer Science 2024-04-10 Mingrui Wu , Sheng Cao

This Ontologies are widely used as a means for solving the information heterogeneity problems on the web because of their capability to provide explicit meaning to the information. They become an efficient tool for knowledge representation…

Artificial Intelligence · Computer Science 2013-06-04 Nora Y. Ibrahim , Sahar A. Mokhtar , Hany M. Harb

Integrating novel medical concepts and relationships into existing ontologies can significantly enhance their coverage and utility for both biomedical research and clinical applications. Clinical notes, as unstructured documents rich with…

Artificial Intelligence · Computer Science 2025-11-21 Guanchen Wu , Yuzhang Xie , Huanwei Wu , Zhe He , Hui Shao , Xiao Hu , Carl Yang

Large Language Models (LLMs) have swiftly emerged as vital resources for different applications in the biomedical and healthcare domains; however, these models encounter issues such as generating inaccurate information or hallucinations.…

Computation and Language · Computer Science 2024-05-06 Mingchen Li , Halil Kilicoglu , Hua Xu , Rui Zhang

We study the problem of entity-relation extraction in the presence of symbolic domain knowledge. Such knowledge takes the form of an ontology defining relations and their permissible arguments. Previous approaches set out to integrate such…

Machine Learning · Computer Science 2021-03-23 Kareem Ahmed , Eric Wang , Guy Van den Broeck , Kai-Wei Chang

Using a language model (LM) pretrained on two languages with large monolingual data in order to initialize an unsupervised neural machine translation (UNMT) system yields state-of-the-art results. When limited data is available for one…

Computation and Language · Computer Science 2020-10-07 Alexandra Chronopoulou , Dario Stojanovski , Alexander Fraser

It is very costly to build up lexical resources and domain ontologies. Especially when confronted with a new application domain lexical gaps and a poor coverage of domain concepts are a problem for the successful exploitation of natural…

Computation and Language · Computer Science 2007-05-23 Dietmar Roesner , Manuela Kunze

We present a word-sense induction method based on pre-trained masked language models (MLMs), which can cheaply scale to large vocabularies and large corpora. The result is a corpus which is sense-tagged according to a corpus-derived sense…

Computation and Language · Computer Science 2022-03-22 Matan Eyal , Shoval Sadde , Hillel Taub-Tabib , Yoav Goldberg

In the face of rapidly expanding online medical literature, automated systems for aggregating and summarizing information are becoming increasingly crucial for healthcare professionals and patients. Large Language Models (LLMs), with their…

Computation and Language · Computer Science 2024-03-07 Niraj Yagnik , Jay Jhaveri , Vivek Sharma , Gabriel Pila

This survey investigates how ontologies, semantic log processing, and Large Language Models (LLMs) enhance cybersecurity. Ontologies structure domain knowledge, enabling interoperability, data integration, and advanced threat analysis.…

Cryptography and Security · Computer Science 2025-10-21 Bruno Lourenço , Pedro Adão , João F. Ferreira , Mario Monteiro Marques , Cátia Vaz

Understanding large, structured documents like scholarly articles, requests for proposals or business reports is a complex and difficult task. It involves discovering a document's overall purpose and subject(s), understanding the function…

Computation and Language · Computer Science 2018-07-27 Muhammad Mahbubur Rahman , Tim Finin

Citation graphs are fundamental tools for modeling scientific structure, but are often fragmented due to missing citations of scientifically connected articles. To address this issue, we propose a computationally efficient hybrid framework…

A typical IR system that delivers and stores information is affected by problem of matching between user query and available content on web. Use of Ontology represents the extracted terms in form of network graph consisting of nodes, edges,…

Information Retrieval · Computer Science 2017-03-23 Gagandeep Singh Narula , Vishal Jain

Ontology reuse aims to foster interoperability and facilitate knowledge reuse. Several approaches are typically evaluated by ontology engineers when bootstrapping a new project. However, current practices are often motivated by subjective,…

Ontology alignment process is overwhelmingly cited in Knowledge Engineering as a key mechanism aimed at bypassing heterogeneity and reconciling various data sources, represented by ontologies, i.e., the the Semantic Web cornerstone. In such…

Artificial Intelligence · Computer Science 2021-04-06 Marouen Kachroudi

Large Language Models (LLMs) are increasingly being integrated into various components of Ontology Matching pipelines. This paper investigates the capability of LLMs to perform ontology matching directly on ontology modules and generate the…

Computation and Language · Computer Science 2025-12-01 Guilherme Sousa , Rinaldo Lima , Cassia Trojahn

Large Language Models (LLMs) have demonstrated impressive capabilities across natural language processing tasks. However, their application to specialized domains such as medicine and biology requires further optimization to ensure factual…

Computation and Language · Computer Science 2025-02-06 Seonok Kim