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We show how to compute for $n$-vertex planar graphs in $O(n^{11/6}{\rm polylog}(n))$ expected time the diameter and the sum of the pairwise distances. The algorithms work for directed graphs with real weights and no negative cycles. In…
We analyze the motion of individual beads of a polymer chain using a discrete version of De Gennes' reptation model that describes the motion of a polymer through an ordered lattice of obstacles. The motion within the tube can be evaluated…
Inverse kinematics is a fundamental problem for articulated robots: fast and accurate algorithms are needed for translating task-related workspace constraints and goals into feasible joint configurations. In general, inverse kinematics for…
Based on transfer matrix techniques and finite size scaling, we study the oriented polymer (self-avoiding walk) with nearest neighbor interaction. In the repulsive regime, various critical exponents are computed and compared with exact…
Sampling edges from a graph in sublinear time is a fundamental problem and a powerful subroutine for designing sublinear-time algorithms. Suppose we have access to the vertices of the graph and know a constant-factor approximation to the…
We give a quantum algorithm for evaluating a class of boolean formulas (such as NAND trees and 3-majority trees) on a restricted set of inputs. Due to the structure of the allowed inputs, our algorithm can evaluate a depth $n$ tree using…
The exact complexity of geometric cuts and bisections is the longstanding open problem including even the dimension one. In this paper, we resolve this problem for dimension one (the real line) by designing an exact polynomial time…
We study the combinatorial complexity of D-dimensional polyhedra defined as the intersection of n halfspaces, with the property that the highest dimension of any bounded face is much smaller than D. We show that, if d is the maximum…
The triangulation complexity of a closed orientable 3-manifold is the minimal number of tetrahedra in any triangulation of the manifold. The main theorem of the paper gives upper and lower bounds on the triangulation complexity of any…
An important goal in algorithm design is determining the best running time for solving a problem (approximately). For some problems, we know the optimal running time, assuming certain conditional lower bounds. In this work, we study the…
We consider the problem of computing the diameter of a unicycle graph (i.e., a graph with a unique cycle). We present an O(n) time algorithm for the problem, where n is the number of vertices of the graph. This improves the previous best…
The Optimal Morse Matching (OMM) problem asks for a discrete gradient vector field on a simplicial complex that minimizes the number of critical simplices. It is NP-hard and has been studied extensively in heuristic, approximation, and…
Let $B$ be a set of $n$ axis-parallel boxes in $\mathbb{R}^d$ such that each box has a corner at the origin and the other corner in the positive quadrant of $\mathbb{R}^d$, and let $k$ be a positive integer. We study the problem of…
Fix an integer n>=1. Suppose that a simple polygon is the union of n triangles whose vertices along the common boundary are arranged cyclically. How many sides can such a union -- to be called regular -- have at most? This gives OEIS…
We study the translocation of a flexible polymer through extended patterned pores using molecular dynamics (MD) simulations. We consider cylindrical and conical pore geometries that can be controlled by the angle of the pore apex $\alpha$.…
The greedy spanner is the highest quality geometric spanner (in e.g. edge count and weight, both in theory and practice) known to be computable in polynomial time. Unfortunately, all known algorithms for computing it take Omega(n^2) time,…
We consider the passage of long polymers of length N through a hole in a membrane. If the process is slow, it is in principle possible to focus on the dynamics of the number of monomers s on one side of the membrane, assuming that the two…
We study the computational complexity of two Boolean nonlinearity measures: the nonlinearity and the multiplicative complexity. We show that if one-way functions exist, no algorithm can compute the multiplicative complexity in time…
The study of the combinatorial diameter of a polyhedron is a classical topic in linear-programming theory due to its close connection with the possibility of a polynomial simplex-method pivot rule. The 2-sum operation is a classical…
Polymers in a melt may be subject to topological constraints, as in the example of unlinked polymer rings. How to do statistical mechanics in the presence of such constraints remains a fundamental open problem. We study the effect of…