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PEACH Tree is an easy-to-use, online tool for displaying multiple sequence alignments and phylogenetic trees side-by-side. PEACH Tree is powerful for rapidly tracing evolutionary and transmission histories by filtering invariant sites out…

Quantitative Methods · Quantitative Biology 2021-12-15 Jordan Douglas , David Welch

Answering range queries in the context of Local Differential Privacy (LDP) is a widely studied problem in Online Analytical Processing (OLAP). Existing LDP solutions all assume a uniform data distribution within each domain partition, which…

Cryptography and Security · Computer Science 2024-08-27 Leixia Wang , Qingqing Ye , Haibo Hu , Xiaofeng Meng

Phylogenetic trees are pervasively used to depict evolutionary relationships. Increasingly, researchers need to visualize large trees and compare multiple large trees inferred for the same set of taxa (reflecting uncertainty in the tree…

Populations and Evolution · Quantitative Biology 2016-04-21 Oscar Robinson , David Dylus , Christophe Dessimoz

The visualization of an image collection is the process of displaying a collection of images on a screen under some specific layout requirements. This paper focuses on an important problem that is not well addressed by the previous methods:…

Multimedia · Computer Science 2016-11-15 Xintong Han , Chongyang Zhang , Weiyao Lin , Mingliang Xu , Bin Sheng , Tao Mei

Understanding propagation structures in graph diffusion processes, such as epidemic spread or misinformation diffusion, is a fundamental yet challenging problem. While existing methods primarily focus on source localization, they cannot…

Social and Information Networks · Computer Science 2025-03-04 Zeeshan Memon , Chen Ling , Ruochen Kong , Vishwanath Seshagiri , Andreas Zufle , Liang Zhao

Updating and querying on a range is a classical algorithmic problem with a multitude of applications. The Segment Tree data structure is particularly notable in handling the range query and update operations. A Segment Tree divides the…

Data Structures and Algorithms · Computer Science 2020-12-08 Nabil Ibtehaz , M. Kaykobad , M. Sohel Rahman

Interactive storytelling benefits from planning and exploring multiple 'what if' scenarios. Modern LLMs are useful tools for ideation and exploration, but current chat-based user interfaces restrict users to a single linear flow. To address…

Artificial Intelligence · Computer Science 2025-04-04 Parsa Ghaffari , Chris Hokamp

The paper presents an iterative version of join-tree clustering that applies the message passing of join-tree clustering algorithm to join-graphs rather than to join-trees, iteratively. It is inspired by the success of Pearl's belief…

Artificial Intelligence · Computer Science 2013-01-07 Rina Dechter , Kalev Kask , Robert Mateescu

Establishing the correspondences between newly acquired points and historically accumulated data (i.e., map) through nearest neighbors search is crucial in numerous robotic applications. However, static tree data structures are inadequate…

Robotics · Computer Science 2024-03-01 Jun Zhu , Hongyi Li , Zhepeng Wang , Shengjie Wang , Tao Zhang

Cybersecurity analysts work on large communication data sets to perform investigative analysis by painstakingly going over thousands of email conversations to find potential scamming activities and the network of cyber scammers.…

Human-Computer Interaction · Computer Science 2020-02-11 Ronak Tanna , Shivam Dhar , Ashwin Sudhir , Shreyash Devan , Shubham Verma

Programming in Prolog is hard for programmers that are used to procedural coding. In this manual the method of drawing search trees is introduced with the aim to get a better understanding of how Prolog works. After giving a first example…

Programming Languages · Computer Science 2020-01-23 Johan Bos

This paper presents enhancements to the projection pursuit tree classifier and visual diagnostic methods for assessing their impact in high dimensions. The original algorithm uses linear combinations of variables in a tree structure where…

Machine Learning · Statistics 2026-03-16 Natalia da Silva , Dianne Cook , Eun-Kyung Lee

This report introduces Juno, a modular Python package for optical design and simulation. Juno consists of a complete library that includes a graphical user interface to design and visualise arbitrary optical elements, set up wave…

Instrumentation and Detectors · Physics 2022-12-27 David Dierickx , Patrick Cleeve , Sergey Gorelick , James C. Whisstock , Alex De Marco

Search trees on trees (STTs) are a far-reaching generalization of binary search trees (BSTs), allowing the efficient exploration of tree-structured domains. (BSTs are the special case in which the underlying domain is a path.) Trees on…

Data Structures and Algorithms · Computer Science 2020-10-29 Benjamin Aram Berendsohn , László Kozma

Self-adjusting data structures are a classic approach to adapting the complexity of operations to the data access distribution. While several self-adjusting variants are known for both binary search trees and B-Trees, existing constructions…

Data Structures and Algorithms · Computer Science 2023-10-10 Alexander Slastin , Dan Alistarh , Vitaly Aksenov

We aim at development white-box machine learning algorithms. We focus here on algorithms for learning axioms in description logic. We extend the Class Expression Learning for Ontology Engineering (CELOE) algorithm contained in the…

Artificial Intelligence · Computer Science 2023-10-02 Marco Pop-Mihali , Adrian Groza

We present Collaborative Trees, a novel tree model designed for regression prediction, along with its bagging version, which aims to analyze complex statistical associations between features and uncover potential patterns inherent in the…

Methodology · Statistics 2024-05-21 Chien-Ming Chi

CLPGUI is a graphical user interface for visualizing and interacting with constraint logic programs over finite domains. In CLPGUI, the user can control the execution of a CLP program through several views of constraints, of finite domain…

Software Engineering · Computer Science 2007-05-23 Francois Fages

Attack trees and attack graphs are both common graphical threat models used by organizations to better understand possible cybersecurity threats. These models have been primarily seen as separate entities, to be used and researched in…

Cryptography and Security · Computer Science 2021-10-07 Nathan Daniel Schiele , Olga Gadyatskaya

Latent tree analysis seeks to model the correlations among a set of random variables using a tree of latent variables. It was proposed as an improvement to latent class analysis --- a method widely used in social sciences and medicine to…

Machine Learning · Computer Science 2016-10-04 Nevin L. Zhang , Leonard K. M. Poon
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