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Current research in biology heavily depends on the availability and efficient use of information. In order to build new knowledge, various sources of biological data must often be combined. Semantic Web technologies, which provide a common…

Quantitative Methods · Quantitative Biology 2009-02-19 Claude Pasquier

Recent genomic and bioinformatic advances have motivated the development of numerous random network models purporting to describe graphs of biological, technological, and sociological origin. The success of a model has been evaluated by how…

Molecular Networks · Quantitative Biology 2007-05-23 Manuel Middendorf , Etay Ziv , Carter Adams , Jen Hom , Robin Koytcheff , Chaya Levovitz , Gregory Woods , Linda Chen , Chris Wiggins

Despite the large quantity of information available, thorough researches in various biological databases are still needed in order to reconstruct and understand the steps that lead to known or new phenomena. By using protein-protein…

Molecular Networks · Quantitative Biology 2014-12-03 Alberto Calderone

Studies regarding knowledge organization and acquisition are of great importance to understand areas related to science and technology. A common way to model the relationship between different concepts is through complex networks. In such…

Social and Information Networks · Computer Science 2018-08-09 Thales S. Lima , Henrique F. de Arruda , Filipi N. Silva , Cesar H. Comin , Diego R. Amancio , Luciano da F. Costa

Distributed blackbox consensus optimization is a fundamental problem in multi-agent systems, where agents must improve a global objective using only local objective queries and limited neighbor communication. Existing methods largely rely…

Multiagent Systems · Computer Science 2026-05-04 Zi-Bo Qin , Feng-Feng Wei , Tai-You Chen , Wei-Neng Chen

We propose communication pattern logic. A communication pattern describes how processes or agents inform each other, independently of the information content. The full-information protocol in distributed computing is the special case…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-08-02 Armando Castañeda , Hans van Ditmarsch , David A. Rosenblueth , Diego A. Velázquez

Brain networks are adaptively rewired continually, adjusting their topology to bring about functionality and efficiency in sensory, motor and cognitive tasks. In model neural network architectures, adaptive rewiring generates complex,…

Neurons and Cognition · Quantitative Biology 2022-01-05 Ilias Rentzeperis , Steeve Laquitaine , Cees van Leeuwen

Recent dynamic tokenisation methods operate directly on bytes and pool their latent representations into patches. This bears similarities to computational models of word segmentation that determine lexical boundaries using spikes in an…

Computation and Language · Computer Science 2025-06-24 Zébulon Goriely , Suchir Salhan , Pietro Lesci , Julius Cheng , Paula Buttery

Large language models deployed as autonomous agents face critical memory limitations, lacking selective forgetting mechanisms that lead to either catastrophic forgetting at context boundaries or information overload within them. While human…

Artificial Intelligence · Computer Science 2026-02-09 Lei Wei , Xiao Peng , Xu Dong , Niantao Xie , Bin Wang

In the domain of digital information dissemination, search engines act as pivotal conduits linking information seekers with providers. The advent of chat-based search engines utilizing Large Language Models (LLMs) and Retrieval Augmented…

Information Retrieval · Computer Science 2024-03-01 Lijia Ma , Xingchen Xu , Yong Tan

Data-driven design and innovation is a process to reuse and provide valuable and useful information. However, existing semantic networks for design innovation is built on data source restricted to technological and scientific information.…

Computation and Language · Computer Science 2022-11-22 Haoyu Zuo , Qianzhi Jing , Tianqi Song , Huiting Liu , Lingyun Sun , Peter Childs , Liuqing Chen

In our understanding, a mind-map is an adaptive engine that basically works incrementally on the fundament of existing transactional streams. Generally, mind-maps consist of symbolic cells that are connected with each other and that become…

Neural and Evolutionary Computing · Computer Science 2009-02-19 Claudine Brucks , Michael Hilker , Christoph Schommer , Cynthia Wagner , Ralph Weires

Multi-agent debate system (MAD) imitating the process of human discussion in pursuit of truth, aims to align the correct cognition of different agents for the optimal solution. It is challenging to make various agents perform right and…

Computation and Language · Computer Science 2024-07-12 Haotian Wang , Xiyuan Du , Weijiang Yu , Qianglong Chen , Kun Zhu , Zheng Chu , Lian Yan , Yi Guan

The scientific community has been increasingly interested in harnessing the power of deep learning to solve various domain challenges. However, despite the effectiveness in building predictive models, fundamental challenges exist in…

Computer Vision and Pattern Recognition · Computer Science 2020-07-01 Shusen Liu , Bhavya Kailkhura , Jize Zhang , Anna M. Hiszpanski , Emily Robertson , Donald Loveland , T. Yong-Jin Han

Large Language Model (LLM) agents have shown great potential in addressing real-world data science problems. LLM-driven data science agents promise to automate the entire machine learning pipeline, yet their real-world effectiveness remains…

Computation and Language · Computer Science 2025-10-09 Yixin Ou , Yujie Luo , Jingsheng Zheng , Lanning Wei , Zhuoyun Yu , Shuofei Qiao , Jintian Zhang , Da Zheng , Yuren Mao , Yunjun Gao , Huajun Chen , Ningyu Zhang

Finding relevant information from large document collections such as the World Wide Web is a common task in our daily lives. Estimation of a user's interest or search intention is necessary to recommend and retrieve relevant information…

Information Retrieval · Computer Science 2016-12-09 Manuel J. A. Eugster , Tuukka Ruotsalo , Michiel M. Spapé , Oswald Barral , Niklas Ravaja , Giulio Jacucci , Samuel Kaski

A main challenge of data-driven sciences is how to make maximal use of the progressively expanding databases of experimental datasets in order to keep research cumulative. We introduce the idea of a modeling-based dataset retrieval engine…

Quantitative Methods · Quantitative Biology 2015-06-19 Ali Faisal , Jaakko Peltonen , Elisabeth Georgii , Johan Rung , Samuel Kaski

Building taxonomies is often a significant part of building an ontology, and many attempts have been made to automate the creation of such taxonomies from relevant data. The idea in such approaches is either that relevant definitions of the…

Artificial Intelligence · Computer Science 2023-12-12 Mathieu d'Aquin

Information seeking is an essential step for open-domain question answering to efficiently gather evidence from a large corpus. Recently, iterative approaches have been proven to be effective for complex questions, by recursively retrieving…

Computation and Language · Computer Science 2021-09-15 Yunchang Zhu , Liang Pang , Yanyan Lan , Huawei Shen , Xueqi Cheng

Most research on adaptive decision-making takes a strategy-first approach, proposing a method of solving a problem and then examining whether it can be implemented in the brain and in what environments it succeeds. We present a method for…

Neural and Evolutionary Computing · Computer Science 2015-09-21 Peter Kvam , Joseph Cesario , Jory Schossau , Heather Eisthen , Arend Hintze