Related papers: Theoretical study of collective modes in DNA at am…
We investigate the electron (hole) transport through short double-stranded DNA wires in which the electrons are strongly coupled to the specific vibrational modes (vibrons) of the DNA. We analyze the problem starting from a tight-binding…
A fundamental result of quantum mechanics is that the fluctuations of a bosonic field are given by its temperature $T$. An electromagnetic mode with frequency $\omega$ in the microwave band has a significant thermal photon occupation at…
Collective response of DNA to THz electric fields is studied in a simple pair bond model. We confirm, with some caveats, a previous observation of destabilising DNA breather modes and explore the parameter-dependence of these modes. It is…
We study the effect of the composition of the genetic sequence on the melting temperature of double stranded DNA, using some simple analytically solvable models proposed in the framework of the wetting problem. We review previous work on…
We calculate the frequencies of collective modes of neutrons, protons and electrons in the outer core of neutron stars. The neutrons and protons are treated in a hydrodynamic approximation and the electrons are regarded as collisionless.…
Vibrational spectra and normal modes of mechanically stable particle packings in three dimensions are analyzed over a range of compressions, from near the jamming transition, where the packings lose their rigidity, to far above it. At high…
For short DNA molecules in crowded environments, we evaluate macroscopic parameters such as the average end-to-end distance and the twist conformation by tuning the strength of the site specific confinement driven by the crowders. The…
We optomechanically measure the vibrations of a nanomechanical system made of a graphene membrane suspended on a silicon nitride nanoresonator. When probing the thermal noise of the coupled nanomechanical device, we observe a significant…
We study quasinormal $f-$mode oscillations in neutron star(NS) interiors within the linearized General Relativistic formalism. We utilize approximately 9000 nuclear Equations of State (EOS) using spectral representation techniques,…
The vibrational dynamics of a DNA molecule with counterions neutralizing the charged phosphate groups have been studied. With the help of elaborated model the conformational vibrations of the DNA double helix with alkaline metal ions have…
We report a study of DNA (150 bp fragments) conformations in very low added salt $<0.05$mM, across wide DNA concentration range $0.0015\leq c \leq 8$~mM (bp). We found an intermediate DNA conformation in the region $0.05 < c < 1$~mM, by…
A model for the motion of ring-shaped DNA in a gel is introduced and studied by numerical simulations and a mean-field approximation. The ring motion is mediated by finger-shaped loops (hernias) that move in an amoeba-like fashion around…
It is shown that the density of modes of the vibrational spectrum of globular proteins is universal, i.e., regardless of the protein in question it closely follows one universal curve. The present study, including 135 proteins analyzed with…
We explore a novel method for measuring the average temperature of the $\nu_x$ component in Type-II core-collapse supernovae. By measuring neutral current incoherent neutrino-Argon interactions in DUNE we can obtain spectral information for…
Normal modes provide a fundamental basis for understanding crucial properties of solids, such as the thermal conductivity, the heat capacity and the sound propagation. While the normal modes are excellently described by plane waves in…
The approach for calculation of the mode intensities of DNA conformational vibrations in the Raman spectra is developed. It is based on the valence-optic theory and the model for description of conformational vibrations of DNA with…
The thermodynamical stability of DNA minicircles is investigated by means of path integral techniques. Hydrogen bonds between base pairs on complementary strands can be broken by thermal fluctuations and temporary fluctuational openings…
We propose a new simple model for DNA denaturation bases on the pendulum model of Englander\cite{A1} and the microscopic model of Peyrard {\it et al.},\cite{A3} so called "combined model". The main parameters of our model are: the coupling…
Although mechanical properties of DNA are well characterized at the kilo base-pair range, a number of recent experiments have suggested that DNA is more flexible at shorter length scales, which correspond to the regime that is crucial for…
The characteristic timescale ($\tau$) of continuum variability of the accretion disk in active galactic nuclei (AGNs) is known to be related to the thermal timescale, which is predicted to scale with AGN luminosity ($L$) and restframe…