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Motivated by the problem of domain formation in chromosomes, we studied a co--polymer model where only a subset of the monomers feel attractive interactions. These monomers are displaced randomly from a regularly-spaced pattern, thus…

Biomolecules · Quantitative Biology 2018-02-13 Matteo Negri , Marco Gherardi , Guido Tiana , Marco Cosentino Lagomarsino

The conducting polymer poly(3,4-ethylenedioxythiophene) (PEDOT) is one of the most researched materials. The 1980s bipolaron model remains the dominant interpretation of the electronic structure of PEDOT. Recent theoretical studies have…

Materials Science · Physics 2024-05-01 Ben Craig , Peter Townsend , Carlos Ponce de Leon , Chris Kriton-Skylaris , Denis Kramer

The dynamical properties of an extended Hubbard model, which is relevant to quarter-filled layered organic molecular crystals, are analyzed. We have computed the dynamical charge correlation function, spectral density, and optical…

Strongly Correlated Electrons · Physics 2009-11-10 J. Merino , A. Greco , R. H. Mckenzie , M. Calandra

We study a disordered network of bistable bonds subjected to periodic strain. The model is inspired by experiments on crumpled sheets and it features behaviors associated with glasses, including a complex energy landscape, memories, and…

Soft Condensed Matter · Physics 2025-07-18 Sheng Huang , Daniel Hexner

Solid polymer electrolytes are considered a promising alternative to traditional liquid electrolytes in energy storage applications because of their good mechanical properties, and excellent thermal and chemical stability. A gap, however,…

Materials Science · Physics 2020-02-19 Boran Ma , Trung Dac Nguyen , Monica Olvera de la Cruz

Quenches in an ion chain can create coherent superpositions of motional states across the linear-zigzag structural transition. The procedure has been described in [Phys. Rev. A 84, 063821 (2011)] and makes use of spin-dependent forces, so…

Quantum Physics · Physics 2012-09-10 Jens D. Baltrusch , Cecilia Cormick , Giovanna Morigi

Colloid-polymer mixtures may undergo either fluid-fluid phase separation or gelation. This depends on the depth of the quench (polymer concentration) and polymer-colloid size ratio. We present a real-space study of dynamics in phase…

Soft Condensed Matter · Physics 2012-09-19 Isla Zhang , C. Patrick Royall , Paul Bartlett , Malcolm A. Faers

We study the segmental dynamics of poly(ethylene oxide) (PEO) from microscopic simulations in the neat polymer and a polymer electrolyte (PEO/LiBF$_4$) by analyzing the normal modes. We verify the applicability of the Rouse theory,…

Soft Condensed Matter · Physics 2008-04-15 Arijit Maitra , Andreas Heuer

Ion transporters in Nature exhibit a wealth of complex transport properties such as voltage gating, activation, and mechanosensitive behavior. When combined, such processes result in advanced ionic machines achieving active ion transport,…

Soft Condensed Matter · Physics 2020-05-08 Laetitia Jubin , Anthony R. Poggioli , Alessandro Siria , Lydéric Bocquet

In this brief tutorial review, I show how phase coherent properties of disordered conductors can be described in a simple and unified way. These properties include transport properties like weak-localization correction and universal…

Mesoscale and Nanoscale Physics · Physics 2007-05-23 Gilles Montambaux

Ionic transport in nanopores or nanochannels is key to many cellular processes and is now being explored as a method for DNA/polymer sequencing and detection. Although apparently simple in its scope, the study of ionic dynamics in confined…

Mesoscale and Nanoscale Physics · Physics 2013-06-13 Andrew Meyertholen , Massimiliano Di Ventra

Finding new ionic conductors that enable significant advancements in the development of energy-storage devices is a challenging goal of current material science. Aside of material classes as ionic liquids or amorphous ion conductors, the…

Materials Science · Physics 2015-09-02 K. Geirhos , P. Lunkenheimer , M. Michl , D. Reuter , A. Loidl

We present the results from an extensive atomistic molecular dynamics simulation study of poly(ethylene oxide) (PEO) doped with various amounts of lithium-bis(trifluoromethane)sulfonimide (LiTFSI) salt under the influence of external…

Soft Condensed Matter · Physics 2021-03-10 Alina Wettstein , Diddo Diddens , Andreas Heuer

Doped one-dimensional (1D) conjugated polymers, such as polyacetylene, have a conductivity of some metals, like copper. We show that when this polymer is asymmetrically doped, unexpected properties are revealed, when compared to the…

Strongly Correlated Electrons · Physics 2008-11-26 Heron Caldas

We investigate the influence of a non-ionic surfactant like polymer on phospholipid vesicles. Our results from cryogenic transmission electron microscopy (cryo-TEM), dynamic light scattering (DLS), small angle neutron and X-ray scattering…

We consider a linear polymer chain in a disordered environment modeled by percolation clusters on a square lattice. The disordered environment is meant to roughly represent molecular crowding as seen in cells. The model may be viewed as the…

Statistical Mechanics · Physics 2015-05-13 Amit Raj Singh , Debaprasad Giri , Sanjay Kumar

We show that when an individual particle is dragged through an assembly of other particles in the presence of quenched disorder, a viscous decoupling transition occurs between the dragged particle and the surrounding particles which is…

Soft Condensed Matter · Physics 2009-11-13 C. J. Olson Reichhardt , C. Reichhardt

We show that driven dislocation assemblies exhibit a set of dynamical phases remarkably similar to those of driven systems with quenched disorder such as vortices in superconductors, magnetic domain walls, and charge density wave materials.…

Materials Science · Physics 2017-12-06 C. Zhou , C. Reichhardt , C. J. Olson Reichhardt , I. J. Beyerlein

The habitat of microorganisms is typically complex and viscoelastic. A natural question arises: Do polymers in a suspension of active swimmers enhance chaotic motion or promote orientational order? We address this issue by performing…

Soft Condensed Matter · Physics 2025-12-23 Yuan Zhou , Qingzhi Zou , Ignacio Pagonabarraga , Kaihuan Zhang , Kai Qi

Relevant information about the nature of the dynamics of ions in electrolytes can be obtained by studying the nonlinear dependence on an applied electric field. Here we use molecular dynamics (MD) simulations to study the field effects for…

Soft Condensed Matter · Physics 2025-03-21 Alina Wettstein , Diddo Diddens , Andreas Heuer
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