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Network of nonlinear dynamical elements often show clustering of synchronization by chaotic instability. Relevance of the clustering to ecological, immune, neural, and cellular networks is discussed, with the emphasis of partially ordered…

chao-dyn · Physics 2009-10-22 Kunihiko Kaneko

Understanding the pathways to crystallization during the deposition of a vapor phase on a cold solid substrate is of great interest in industry, e.g., for the realization of electronic devices made of crystallites-free glassy materials, as…

Soft Condensed Matter · Physics 2023-10-03 Fabio Leoni , Hajime Tanaka , John Russo

Graph clustering or community detection constitutes an important task for investigating the internal structure of graphs, with a plethora of applications in several domains. Traditional techniques for graph clustering, such as spectral…

We investigate irreversible aggregation processes driven by a source of small mass clusters. In the spatially homogeneous situation, a well-mixed system is consists of clusters of various masses whose concentrations evolve according to an…

Statistical Mechanics · Physics 2025-01-20 P. L. Krapivsky , Sergey A. Matveev

We present an experimental study on the collective behavior of macroscopic self-propelled particles that are externally excited by light. This property allows testing the system response to the excitation intensity in a very versatile…

Soft Condensed Matter · Physics 2025-09-03 Sára Lévay , Axel Katona , Hartmut Löwen , Raúl Cruz Hidalgo , Iker Zuriguel

Inspired by biology's most sophisticated computer, the brain, neural networks constitute a profound reformulation of computational principles. Remarkably, analogous high-dimensional, highly-interconnected computational architectures also…

Disordered Systems and Neural Networks · Physics 2024-01-23 Constantine Glen Evans , Jackson O'Brien , Erik Winfree , Arvind Murugan

The infall and merger scenario of massive clusters in the Milky Way's potential well, as one of the Milky Way formation mechanisms, is reexamined to understand how the stars of the merging clusters are redistributed during and after the…

Astrophysics of Galaxies · Physics 2023-06-21 Maria Gabriela Navarro , Roberto Capuzzo-Dolcetta , Manuel Arca-Sedda , Dante Minniti

We introduce an autocatalytic aggregation model in which the rate at which two clusters merge to form a cluster is controlled by the presence of a third "catalytic" cluster whose mass must equal to the mass of one of the reaction partners.…

Statistical Mechanics · Physics 2025-01-14 P. L. Krapivsky , S. Redner

We study the nucleation of crystalline cluster phases in the generalized exponential model with exponent n=4. Due to the finite value of this pair potential for zero separation, at high densities the system forms cluster crystals with…

Soft Condensed Matter · Physics 2016-09-01 Christian Leitold , Christoph Dellago

Genes are often regulated in living cells by proteins called transcription factors (TFs) that bind directly to short segments of DNA in close proximity to specific genes. These binding sites have a conserved nucleotide appearance, which is…

Statistics Theory · Mathematics 2007-06-13 Shane T. Jensen , Jun S. Liu

Quenched randomness can lead to robust non-equilibrium phases of matter in periodically driven (Floquet) systems. Analyzing transitions between such dynamical phases requires a method capable of treating the twin complexities of disorder…

Disordered Systems and Neural Networks · Physics 2018-11-12 William Berdanier , Michael Kolodrubetz , S. A. Parameswaran , Romain Vasseur

We demonstrate particle clustering on macroscopic scales in a coupled nonequilibrium system where two species of particles are advected by a fluctuating landscape and modify the landscape in the process. The phase diagram generated by…

Statistical Mechanics · Physics 2016-05-24 Shauri Chakraborty , Sukla Pal , Sakuntala Chatterjee , Mustansir Barma

Clusters appear in nature in a diversity of contexts, involving distances as long as the cosmological ones, and down to atoms and molecules and the very small nuclear size. They also appear in several other scenarios, in particular in…

Populations and Evolution · Quantitative Biology 2020-02-19 D. Bazeia , M. V. de Moraes , B. F. de Oliveira

A method for dimension reduction with clustering, classification, or discriminant analysis is introduced. This mixture model-based approach is based on fitting generalized hyperbolic mixtures on a reduced subspace within the paradigm of…

Methodology · Statistics 2017-10-09 Katherine Morris , Paul D. McNicholas

We show how the interplay of non-linear dynamics, self-gravity, and fluctuations leads to self-affine behavior of matter density correlations quite generically, i.e., with a power-law exponent whose value does not depend in a very direct…

Astrophysics · Physics 2007-05-23 A. Dominguez , D. Hochberg , J. M. Martin-Garcia , J. Perez-Mercader , L. S. Schulman

Normalizing flows can transform a simple prior probability distribution into a more complex target distribution. Here, we evaluate the ability and efficiency of generative machine learning methods to sample the Boltzmann distribution of an…

Soft Condensed Matter · Physics 2024-09-16 Gerhard Jung , Giulio Biroli , Ludovic Berthier

The paper has been withdrawn since more effective experiments should be completed. Auto-encoders (AE) has been widely applied in different fields of machine learning. However, as a deep model, there are a large amount of learnable…

Machine Learning · Computer Science 2017-03-14 Zihao Wang , Yiuming Cheung

Coagulation and fragmentation (CF) is a fundamental process by which particles attach to each other to form clusters while existing clusters break up into smaller ones. It is a ubiquitous process that plays a key role in many physical and…

Statistical Mechanics · Physics 2020-12-22 Farid Manuchehrfar , Wei Tian , Tom Chou , Jie Liang

There is a growing interest in characterizing circular data found in biological systems. Such data are wide ranging and varied, from signal phase in neural recordings to nucleotide sequences in round genomes. Traditional clustering…

Machine Learning · Computer Science 2023-09-19 Xiaoxiao Sun , Paul Sajda

Fair graph clustering is crucial for ensuring equitable representation and treatment of diverse communities in network analysis. Traditional methods often ignore disparities among social, economic, and demographic groups, perpetuating…

Machine Learning · Computer Science 2024-10-22 Sina Baharlouei , Sadra Sabouri