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We study in detail the application of renormalisation theory to models of cluster aggregation and fragmentation of relevance to nucleation and growth processes. We investigate the Becker-Dorging equations, originally formulated to describe…

Statistical Mechanics · Physics 2009-11-07 Jonathan AD Wattis , Peter V Coveney

We study in detail the application of renormalisation theory to models of cluster aggregation and fragmentation of relevance to nucleation and growth processes. In particular, we investigate the Becker-Doring (BD) equations, originally…

Statistical Mechanics · Physics 2009-11-07 Jonathan AD Wattis , Peter V Coveney

We introduce and analyse a variant of the Becker-D{\"o}ring equations that models the growth of clusters through the gain or loss of monomers. Motivated by enzymatic reactions in biology, this model incorporates irreversible fragmentation…

Analysis of PDEs · Mathematics 2025-08-12 Simon Loin

Concentration gradients of signaling molecules are essential for patterning during development and they have been observed in both unicellular and multicellular systems. In subcellular systems, clustering of the signaling molecule has been…

Molecular Networks · Quantitative Biology 2015-02-09 Timothy E Saunders

A hierarchical system of equations is introduced to describe dynamics of `sizes' of infinite clusters which coagulate and fragmentate with homogeneous rates of certain form. We prove that this system of equations is solved weakly by…

Probability · Mathematics 2018-09-03 Kenji Handa

We develop a coagulation-fragmentation model to study a system composed of a small number of stochastic objects moving in a confined domain, that can aggregate upon binding to form local clusters of arbitrary sizes. A cluster can also…

Subcellular Processes · Quantitative Biology 2012-01-19 Nathanael Hoze , David Holcman

Apart from the role the clustering coefficient plays in the definition of the small-world phenomena, it also has great relevance for practical problems involving networked dynamical systems. To study the impact of the clustering coefficient…

Physics and Society · Physics 2022-07-19 Robert E. Kooij , Nikolaj Horsevad Sørensen , Roland Bouffanais

The Ising and BEG models critical behavior is analyzed in 2D and 3D by means of a renormalization group scheme on small clusters made of a few lattice cells. Different kinds of cells are proposed for both ordered and disordered model cases.…

Statistical Mechanics · Physics 2014-12-23 Fabrizio Antenucci , Andrea Crisanti , Luca Leuzzi

Coalescence-fragmentation problems are of great interest across the physical, biological, and recently social sciences. They are typically studied from the perspective of the rate equations, at the heart of such models are the rules used…

Other Condensed Matter · Physics 2009-11-27 Blazej Ruszczycki , Ben Burnett , Zhenyuan Zhao , Neil F. Johnson

Coagulation-fragmentation processes describe the stochastic association and dissociation of particles in clusters. Cluster dynamics with cluster-cluster interactions for a finite number of particles has recently attracted attention…

Probability · Mathematics 2016-11-22 Nathanael Hoze , David Holcman

We present a new model of homogeneous aggregation that contains the essential physical ideas of the classical predecessors, the Becker-Doring and Lifshitz-Slyovoz models. These classical models, which give different predictions, are…

Materials Science · Physics 2007-05-23 Yossi Farjoun , John C. Neu

Soft-granular media, such as dense emulsions, foams or tissues, exhibit either fluid- or solid-like properties depending on the applied external stresses. Whereas bulk rheology of such materials has been thoroughly investigated, the…

Soft Condensed Matter · Physics 2024-07-04 Michal Bogdan , Jesus Pineda , Mihir Durve , Leon Jurkiewicz , Sauro Succi , Giovanni Volpe , Jan Guzowski

We prove that time-periodic solutions arise via Hopf bifurcation in a finite closed system of coagulation-fragmentation equations. The system we treat is a variant of the Becker-Doering equations, in which clusters grow or shrink by…

Dynamical Systems · Mathematics 2020-04-22 Robert L. Pego , Juan J. L. Velázquez

We present a new model of homogeneous aggregation that contains the essential physical ideas of the classical predecessors, the Becker-Doring and Lifshitz-Slyovoz models. These classical models, which give different predictions, are…

Statistical Mechanics · Physics 2008-10-23 Yossi Farjoun

Far from equilibrium, neural systems self-organize across multiple scales. Exploiting multiscale self-organization in neuroscience and artificial intelligence requires a computational framework for modeling the effective non-equilibrium…

Neurons and Cognition · Quantitative Biology 2025-10-09 Nathan X. Kodama

We propose a model for cell polarization based on the Becker-D\"oring equations with the first coagulation coefficient equal to zero. We show convergence to equilibrium for power-law coagulation and fragmentation rates and obtain a loss of…

Analysis of PDEs · Mathematics 2023-08-10 Lorena Pohl , Barbara Niethammer

We study the Becker-D\"oring bubblelator, a variant of the Becker-D\"oring coagulation-fragmentation system that models the growth of clusters by gain or loss of monomers. Motivated by models of gas evolution oscillators from physical…

Analysis of PDEs · Mathematics 2021-09-28 Barbara Niethammer , Robert L. Pego , André Schlichting , Juan J. L. Velázquez

Some models of clustering processes are formulated and analytically solved employing generating functions methods. Those models include events which result from combined action of the coagulation and fragmentation processes. Fragmentation…

Statistical Mechanics · Physics 2009-11-07 Vladimir M. Dubovik , Arkadi G. Galperin , Viktor S. Richvitsky , Aleksey A. Lushnikov

In this brief article I show how the notion of coarse graining and the Renormalization Group enter naturally in the dynamics of genetic systems, in particular in the presence of recombination. I show how the latter induces a dynamics…

Condensed Matter · Physics 2007-05-23 Christopher R. Stephens

There are rich emergent phase behaviors in non-equilibrium active systems. Flocking and clustering are two representative dynamic phases. The relationship between these two phases is still unclear. In the paper, we numerically investigate…

Soft Condensed Matter · Physics 2023-08-09 Lu Chen , Bokai Zhang , Z. C. Tu
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