Related papers: Exact free energy distribution function of a rando…
Monte Carlo simulations are used to study the conformational properties of a folded semiflexible polymer confined to a long channel. We measure the variation in the conformational free energy with respect to the end-to-end distance of the…
The aim of this paper is twofold: - To give an elementary and self-contained proof of an explicit formula for the free energy for a general class of polymer chains interacting with an environment through periodic potentials. This…
It is common to study polymer physics through the use of idealized single-chain models, and the most popular of these is the freely jointed chain model. In certain thermodynamic ensembles, statistical mechanical treatment of this model is…
The distribution function of the end-to-end distance of a semiflexible polymer, G(R;L) (where R denotes the end-to-end distance and L the contour length), is calculated using a meanfield-like approach. The theory yields an extremely simple…
We revisit the Fokker-Planck based theory of driven polymer translocation through a narrow nanopore. A bead-spring model of a uniformly charged polyelectrolyte chain translocating through a semi-implicit model of a nanopore embedded in a…
We analyze the statistics of work generated by a gradient flow to stretch a nonlinear polymer. We obtain the Large Deviation Function (LDF) of the work in the full range of appropriate parameters by combining analytical and numerical tools.…
The dynamics of heavy quarkonium systems in the strong coupling regime reduces to a quantum mechanical problem with a number of potentials which may be organized in powers of 1/m, m being the heavy quark mass. The potentials must be…
We consider the model of the directed polymer in a random medium of dimension 1+3, and investigate its multifractal properties at the localization/delocalization transition. In close analogy with models of the quantum Anderson localization…
In this report, the explicit probability density functions of the random Euclidean distances associated with equilateral triangles are given, when the two endpoints of a link are randomly distributed in 1) the same triangle, 2) two adjacent…
The probability that a randomly accelerated particle in two dimensions has not yet left a simply connected domain ${\cal A}$ after a time $t$ decays as $e^{-E_0t}$ for long times. The same quantity $E_0$ also determines the confinement free…
We suggest a theoretical description of the force-induced translocation dynamics of a polymer chain through a nanopore. Our consideration is based on the tensile (Pincus) blob picture of a pulled chain and the notion of propagating front of…
We study dynamics of a Rouse polymer chain, which diffuses in a three-dimensional space under the constraint that one of its ends, referred to as the slip-link, may move only along a one-dimensional line containing randomly placed,…
We study the model of Directed Polymers in Random Environment in 1+1 dimensions, where the distribution at a site has a tail which decays regularly polynomially with power \alpha, where \alpha \in (0,2). After proper scaling of temperature…
Fixed angle scattering at high energy in a string theory with boundaries satisfying Dirichlet conditions (Dirichlet strings) in $D=4$ is shown to have logarithmic dependence on energy, in addition to the power-like behavior known before.…
The probability distribution for the free energy of directed polymers in random media (DPRM) with uncorrelated noise in $d=1+1$ dimensions satisfies the Tracy-Widom distribution. We inquire if and how this universal distribution is modified…
We study the non--equilibrium motion of an elastic string in a two dimensional pinning landscape using Langevin dynamics simulations. The relaxation of a line, initially flat, is characterized by a growing length, $L(t)$, separating the…
We consider a long, semiflexible polymer, with persistence length $P$ and contour length $L$, fluctuating in a narrow cylindrical channel of diameter $D$. In the regime $D\ll P\ll L$ the free energy of confinement $\Delta F$ and the length…
We design an arbitrary-order free energy satisfying discontinuous Galerkin (DG) method for solving time-dependent Poisson-Nernst-Planck systems. Both the semi-discrete and fully discrete DG methods are shown to satisfy the corresponding…
We introduce the strict-weak polymer model, and show the KPZ universality of the free energy fluctuation of this model for a certain range of parameters. Our proof relies on the observation that the discrete time geometric q-TASEP model,…
Thermally fluctuating sheets and ribbons provide an intriguing forum in which to investigate strong violations of Hooke's Law: large distance elastic parameters are in fact not constant, but instead depend on the macroscopic dimensions.…