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A fast and accurate grid-based method with low memory requirement is presented to calculate volume characteristics in molecular systems. The distribution of volume and packing density is characterized in globular proteins, where void space…

Biological Physics · Physics 2018-10-23 Jenny Farmer , Sheridan B. Green , Donald J. Jacobs

We study critical site percolation on the triangular lattice. We find the difference of the probabilities of having a percolation interface to the right and to the left of two given points in the scaling limit. This generalizes both Cardy's…

Probability · Mathematics 2025-04-22 Mikhail Khristoforov , Mikhail Skopenkov , Stanislav Smirnov

The scaling laws in an infrared conformal (IR) theory are dictated by the critical exponents of relevant operators. We have investigated these scaling laws at leading order in two previous papers. In this work we investigate further…

High Energy Physics - Phenomenology · Physics 2014-03-11 Luigi Del Debbio , Roman Zwicky

We study the long range percolation model on $\mathbb{Z}$ where sites $i$ and $j$ are connected with probability $\beta |i-j|^{-s}$. Graph distances are now well understood for all exponents $s$ except in the case $s=2$ where the model…

Probability · Mathematics 2015-11-10 Jian Ding , Allan Sly

Predicting protein secondary structure using lattice model is one of the most studied computational problem in bioinformatics. Here secondary structure or three dimensional structure of protein is predicted from its amino acid sequence.…

Computational Engineering, Finance, and Science · Computer Science 2014-07-18 Dipan Lal Shaw , M. Sohel Rahman , A. S. M. Sohidull Islam , Shuvasish Karmaker

We carry out an analysis of the multibody decay cascade $\Lambda_b\to \Lambda^*_J J/\psi \to pK^- J/\psi$ with the $ \Lambda^*_J$ resonance including $\Lambda^*_{1520},\Lambda^*_{1600}$, and $\Lambda^*_{1800}$, and $J/\psi$ reconstructed by…

High Energy Physics - Phenomenology · Physics 2022-11-22 Zhi-Peng Xing , Fei Huang , Wei Wang

The motion involved in barrier crossing for protein folding are investigated in terms of the chain dynamics of the polymer backbone, completing the microscopic description of protein folding presented in the previous paper. Local reaction…

Soft Condensed Matter · Physics 2009-10-31 John J. Portman , Shoji Takada , Peter G. Wolynes

We introduce the concept of a class of equivalence of molecular clouds represented by an abstract spherically symmetric, isotropic object. This object is described by use of abstract scales in respect to a given mass density distribution.…

Astrophysics of Galaxies · Physics 2017-01-18 Sava Donkov , Todor V. Veltchev , Ralf S. Klessen

We explore features of the scalar structure $X_0(2900)$, which is one of the two resonances discovered recently by LHCb in the $D^{-}K^{+}$ invariant mass distribution in the decay $B^{+} \to D^{+}D^{-}K^{+}$. We treat $ X_0(2900)$ as a…

High Energy Physics - Phenomenology · Physics 2021-08-11 S. S. Agaev , K. Azizi , H. Sundu

We derive exact analytical expressions for the critical amplitudes $A_\psi$, $A_{gap}$ in the scaling laws for the fermion condensate $<\bar \psi \psi> = A_\psi m^{1/3} g^{2/3}$ and for the mass of the lightest state $M_{gap} = A_{gap}…

High Energy Physics - Theory · Physics 2016-09-06 A. V. Smilga

In high dimensional percolation at parameter $p < p_c$, the one-arm probability $\pi_p(n)$ is known to decay exponentially on scale $(p_c - p)^{-1/2}$. We show the same statement for the ratio $\pi_p(n) / \pi_{p_c}(n)$, establishing a form…

Probability · Mathematics 2021-08-02 Shirshendu Chatterjee , Jack Hanson , Philippe Sosoe

Correlation length exponent $\nu$ for long linear DNA molecules was determined by direct measurement of the average end-to-end distance as a function of the contour length $s$ by means of atomic force microscopy (AFM). Linear DNA, up to…

Soft Condensed Matter · Physics 2009-11-11 Francesco Valle , Melanie Favre , Paolo De Los Rios , Angelo Rosa , Giovanni Dietler

We present an experimental investigation of the probability distribution of normal contact forces, $P(F)$, at the bottom boundary of static three dimensional packings of compressible granular materials. We find that the degree of…

Soft Condensed Matter · Physics 2009-11-07 J. Michael Erikson , Nathan W. Mueggenburg , Heinrich M. Jaeger , Sidney R. Nagel

We study the flow of fluid in porous media in dimensions $d=2$ and 3. The medium is modeled by bond percolation on a lattice of $L^d$ sites, while the flow front is modeled by tracer particles driven by a pressure difference between two…

A study is presented of the mass and spin-parity of the new boson recently observed at the LHC at a mass near 125 GeV. An integrated luminosity of 17.3 inverse femtobarns, collected by the CMS experiment in proton-proton collisions at…

High Energy Physics - Experiment · Physics 2013-03-07 CMS Collaboration

Series expansion methods are used to study directed bond percolation clusters on the square lattice whose lateral growth is restricted by a wall parallel to the growth direction. The percolation threshold $p_c$ is found to be the same as…

Condensed Matter · Physics 2019-08-15 J W Essam , A J Guttmann , I Jensen , D TanlaKishani

We investigate the continuum limit in $SO(N)$ Principal Chiral Models concentrating in detail on the $SO(4)$ model and its covering group SU(2)xSU(2). We compute the mass gap in terms of Lambda_MS and compare with the prediction of…

High Energy Physics - Lattice · Physics 2009-10-28 M. Hasenbusch , R. R. Horgan

A theoretical scaling law for the size effect of the strength of brittle materials is presented. To some extend, it can be seen as an extension of the well known Weibull law. For that a correlated Random Fields is used to model the…

Materials Science · Physics 2018-09-21 Emmanuel Roubin , Jean-Baptiste Colliat

We build a multifractal object and use it as a support to study percolation. We identify some differences between percolation in a multifractal and in a regular lattice. We use many samples of finite size lattices and draw the histogram of…

Statistical Mechanics · Physics 2016-08-31 G. Corso , J. E. Freitas , L. S. Lucena , R. F. Soares

This paper presents a Monte-Carlo study of percolation in a distorted square lattice, in which, the adjacent sites are not equidistant. Starting with an undistorted lattice, the position of the lattice sites are shifted through a tunable…

Statistical Mechanics · Physics 2019-01-16 Sayantan Mitra , Dipa Saha , Ankur Sensharma
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