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Elastic systems that are spatially heterogeneous in their mechanical response pose special challenges for molecular simulations. Standard methods for sampling thermal fluctuations of a system's size and shape proceed through a series of…

Materials Science · Physics 2015-05-13 Sander Pronk , Phillip L. Geissler

The problem of computing functions of values at the nodes in a network in a totally distributed manner, where nodes do not have unique identities and make decisions based only on local information, has applications in sensor, peer-to-peer,…

Networking and Internet Architecture · Computer Science 2007-05-23 Damon Mosk-Aoyama , Devavrat Shah

We introduce a fast and easy-to-implement simulation algorithm for a multivariate normal distribution truncated on the intersection of a set of hyperplanes, and further generalize it to efficiently simulate random variables from a…

Computation · Statistics 2017-02-21 Yulai Cong , Bo Chen , Mingyuan Zhou

We give an algorithm that generates a uniformly random contingency table with specified marginals, i.e. a matrix with non-negative integer values and specified row and column sums. Such algorithms are useful in statistics and combinatorics.…

Combinatorics · Mathematics 2021-06-17 Andrii Arman , Pu Gao , Nicholas Wormald

We introduce a powerful and flexible MCMC algorithm for stochastic simulation. The method builds on a pseudo-marginal method originally introduced in [Genetics 164 (2003) 1139--1160], showing how algorithms which are approximations to an…

Statistics Theory · Mathematics 2009-04-01 Christophe Andrieu , Gareth O. Roberts

Sampling from complicated probability distributions is a hard computational problem arising in many fields, including statistical physics, optimization, and machine learning. Quantum computers have recently been used to sample from…

Normalizing flows can transform a simple prior probability distribution into a more complex target distribution. Here, we evaluate the ability and efficiency of generative machine learning methods to sample the Boltzmann distribution of an…

Soft Condensed Matter · Physics 2024-09-16 Gerhard Jung , Giulio Biroli , Ludovic Berthier

Given a convex function $f\colon\mathbb{R}^{d}\to\mathbb{R}$, the problem of sampling from a distribution $\propto e^{-f(x)}$ is called log-concave sampling. This task has wide applications in machine learning, physics, statistics, etc. In…

Quantum Physics · Physics 2023-12-11 Andrew M. Childs , Tongyang Li , Jin-Peng Liu , Chunhao Wang , Ruizhe Zhang

Numerical procedures to generate random variates that follow loss-cone velocity distributions in particle simulations are presented. We propose a simple summation algorithm for the Ashour-Abdalla--Kennel-type loss-cone distribution, also…

Plasma Physics · Physics 2024-09-10 Seiji Zenitani , Shin'ya Nakano

Drawing from the theory of stochastic differential equations, we introduce a novel sampling method for known distributions and a new algorithm for diffusion generative models with unknown distributions. Our approach is inspired by the…

Statistics Theory · Mathematics 2024-07-12 Xicheng Zhang

We apply extensive Monte Carlo simulations to study the probability distribution $P(m)$ of the order parameter $m$ for the simple cubic Ising model with periodic boundary condition at the transition point. Sampling is performed with the…

Computational Physics · Physics 2020-03-18 Jiahao Xu , Alan M. Ferrenberg , David P. Landau

We present efficient algorithms to generate a bit string in which each bit is set with arbitrary probability. By adopting a hybrid algorithm, i.e., a finite-bit density approximation with correction techniques, we achieve 3.8 times faster…

Statistical Mechanics · Physics 2019-02-07 Hiroshi Watanabe , Satoshi Morita , Synge Todo , Naoki Kawashima

The central limit theorem ensures that a sum of random variables tends to a Gaussian distribution as their total number tends to infinity. However, for a class of positive random variables, we find that the sum tends faster to a log-normal…

Fluid Dynamics · Physics 2013-10-16 H. Mouri

We describe a uniformly fast algorithm for generating points \vec{x} uniformly in a hypercube with the restriction that the difference between each pair of coordinates is bounded. We discuss the quality of the algorithm in the sense of its…

Computational Physics · Physics 2009-11-06 A. van Hameren , R. Kleiss

We propose a simple doubly stochastic block Gauss--Seidel algorithm for solving linear systems of equations. By varying the row partition parameter and the column partition parameter of the coefficient matrix, we recover the Landweber…

Numerical Analysis · Mathematics 2020-07-09 Kui Du , Xiaohui Sun

Stochastic simulation algorithms such as likelihood weighting often give fast, accurate approximations to posterior probabilities in probabilistic networks, and are the methods of choice for very large networks. Unfortunately, the special…

Artificial Intelligence · Computer Science 2016-11-26 Keiji Kanazawa , Daphne Koller , Stuart Russell

We suggest fast algorithm for the matrix generator of pseudorandom numbers based on Kolmogorov-Anosov K systems which has been proposed earlier. This algorithm reduces $N^{2}$ operation of the matrix generator to $NlnN$ and essentially…

High Energy Physics - Lattice · Physics 2022-04-06 N. Z. Akopov , E. M. Madounts , A. B. Nersesian , G. K. Savvidy , W. Greiner

We develop a biased Monte Carlo algorithm to measure probabilities of rare events in cluster-cluster aggregation for arbitrary collision kernels. Given a trajectory with a fixed number of collisions, the algorithm modifies both the waiting…

Statistical Mechanics · Physics 2023-05-24 Rahul Dandekar , R. Rajesh , V. Subashri , Oleg Zaboronski

Parallel supercomputer-based Monte Carlo applications depend on pseudorandom number generators that produce independent pseudorandom streams across many separate processes. We propose a new scalable class of parallel pseudorandom number…

Computational Physics · Physics 2015-02-03 Paul D. Beale

A simple numerical method for loading of a relativistic Maxwellian-type distribution is proposed based on inverse transform sampling. The relativistic Maxwellian energy distribution is introduced as an alternative to the Maxwell-J\"{u}ttner…

Plasma Physics · Physics 2026-03-05 Takayuki Umeda