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One of the central problems in epigenetics is how epigenetic modification patterns and chromatin structure are regulated in the cell nucleus. The polymer Potts model, a recently studied model of chromatins, is introduced with an offset in…

Soft Condensed Matter · Physics 2025-05-13 Ryo Nakanishi , Koji Hukushima

We investigate the effect of initial conditions on the dynamic exponents of the interacting monomer-monomer model with infinitely many absorbing states in one dimension. This model exhibits a directed Ising (DI) type transition from an…

Statistical Mechanics · Physics 2007-05-23 Heung Sik Park , Hyunggyu Park

Polymers with active segments constitute prospective future materials and are used as a model for some biological systems such as chromatin. The directions of the active forces are typically introduced with temporal or spatial correlations…

Soft Condensed Matter · Physics 2024-11-25 Adam H. T. P. Höfler , Iurii Chubak , Christos N. Likos , Jan Smrek

A phase diagram for a surface interacting long flexible partially directed polymer chain in a two-dimensional poor solvent where the possibility of collapse in the bulk exists is determined using exact enumeration method. We used a model of…

Statistical Mechanics · Physics 2020-12-29 Pramod K Mishra , Yashwant Singh

By analyzing the real space nonequilibrium dynamics of polymers, we elucidate the physics of driven translocation and propose its dynamical scaling scenario analogous to that in the surface growth phenomena. We provide a detailed account of…

Soft Condensed Matter · Physics 2011-11-28 Takuya Saito , Takahiro Sakaue

We investigate polymers pulled away from an interacting surface, where the force is applied to the untethered endpoint and at an angle $\theta$ to the surface. We use the canonical self-avoiding walk model of polymers and obtain the phase…

Soft Condensed Matter · Physics 2026-03-03 C J Bradly , N R Beaton , A L Owczarek

We investigate the phase diagram of disordered copolymers at the interface between two selective solvents, and in particular its weak-coupling behavior, encoded in the slope $m_c$ of the critical line at the origin. In mathematical terms,…

Probability · Mathematics 2008-11-25 T. Bodineau , G. Giacomin , H. Lacoin , F. Toninelli

We present the exact solutions of various directed walk models of polymers confined to a slit and interacting with the walls of the slit via an attractive potential. We consider three geometric constraints on the ends of the polymer and…

Statistical Mechanics · Physics 2009-11-11 R Brak , A L Owczarek , A Rechnitzer , S G Whittington

We investigate the continuum q-Potts model at its transition point from the disordered to the ordered regime, with particular emphasis on the coexistence of disordered and ordered phases in the high-q case. We argue that occurrence of phase…

Mathematical Physics · Physics 2007-05-23 Hans-Otto Georgii , Jozsef Lorinczi , Jani M. Lukkarinen

Consider directed polymers in a random environment on the complete graph of size $N$. This model can be formulated as a product of i.i.d. $N\times N$ random matrices and its large time asymptotics is captured by Lyapunov exponents and the…

Probability · Mathematics 2018-01-22 Francis Comets , Gregorio R. Moreno Flores , Alejandro F. Ramirez

Previous theories of dilute polymer solutions have failed to distinguish clearly between two very different ways of taking the long-chain limit: (I) $N \to\infty$ at fixed temperature $T$, and (II) $N \to\infty$, $T \to T_\theta$ with $x…

High Energy Physics - Lattice · Physics 2010-12-17 Alan D. Sokal

Single partially confined collapsed polymers are studied in two dimensions. They are described by self-avoiding random walks with nearest-neighbour attractions below the $\Theta$-point, on the surface of an infinitely long cylinder. For the…

Statistical Mechanics · Physics 2009-11-07 Hsiao-Ping Hsu , Peter Grassberger

We study the model of a partially directed flexible or semi-flexible homopolymer on a square lattice, subject to an externally applied force, in a direction either parallel to, or perpendicular to the preferred direction. The polymer is…

Statistical Mechanics · Physics 2015-05-19 Pui-Man Lam , Yi Zhen

We analyze the large-scale dynamics of vortex lattices and charge density waves driven in a disordered potential. Using a perturbative coarse-graining procedure we present an explicit derivation of non-equilibrium terms in the renormalized…

Statistical Mechanics · Physics 2009-10-30 Stefan Scheidl , Valerii M. Vinokur

The one dimensional direct polymer in random media model is investigated using a variational approach in the replica space. We demonstrate numerically that the stable point is a maximum and the corresponding statistical properties for the…

Disordered Systems and Neural Networks · Physics 2007-05-23 Andrea Pagnani

We study the differences in electrical charge transport dynamics of the conductivity enhancement of poly(3,4-ethylenedioxythiophene) (PEDOT) derivatives under geometrical confinement. The results of polymer blend poly(3,4-ethylene…

Materials Science · Physics 2022-03-04 Sukanya Das , Anil Kumar , K. S. Narayan

We develop a unified scaling framework for the end-position distributions of tethered polymers confined in finite cylindrical geometries. Two observables are analysed: the longitudinal distribution P(x), along the confinement axis, and the…

Soft Condensed Matter · Physics 2025-12-16 Bibhatsu Kuiri , Rittwick Mondal , Dipankar Biswas , Soumyajyoti Kabi

We study a model of two polymers confined to a slit with sticky walls. More precisely, we find and analyse the exact solution of two directed friendly walks in such a geometry on the square lattice. We compare the infinite slit limit, in…

Statistical Mechanics · Physics 2015-06-19 Thomas Wong , Aleksander L. Owczarek , Andrew Rechnitzer

The equilibrium statistical mechanics of classical directed polymers in 2 dimensions is well known to be equivalent to the imaginary-time quantum dynamics of a 1+1-dimensional many-particle system, with polymer configurations corresponding…

Soft Condensed Matter · Physics 2013-05-30 D. Zeb Rocklin , Shina Tan , Paul M. Goldbart

We investigate the effect of chemically patterned surfaces on the morphology of diblock copolymers below the order-disorder transition. Profiles for lamellar phases in contact with one surface, or confined between two surfaces are obtained…

Soft Condensed Matter · Physics 2009-11-07 Yoav Tsori , David Andelman