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For cellular functions like division and polarization, protein pattern formation driven by NTPase cycles is a central spatial control strategy. Operating far from equilibrium, no general theory links microscopic reaction networks and…

Biological Physics · Physics 2024-10-01 Henrik Weyer , Tobias A. Roth , Erwin Frey

We study a moving boundary model of non-conserved interface growth that implements the interplay between diffusive matter transport and aggregation kinetics at the interface. Conspicuous examples are found in thin film production by…

Statistical Mechanics · Physics 2009-11-13 Matteo Nicoli , Mario Castro , Rodolfo Cuerno

The presence of one or more species at some spatial locations but not others is a central matter in ecology. This phenomenon is related to ecological pattern formation. Nonlocal interactions can be considered as one of the mechanisms…

Populations and Evolution · Quantitative Biology 2017-12-29 Ozgur Aydogmus

We propose a simple, exactly solvable, model of interface growth in a random medium that is a variant of the zero-temperature random-field Ising model on the Cayley tree. This model is shown to have a phase diagram (critical depinning field…

Statistical Mechanics · Physics 2015-06-16 Hiroki Ohta , Martin-Luc Rosinberg , Gilles Tarjus

We present a subcritical fracture growth model, coupled with the elastic redistribution of the acting mechanical stress along rugous rupture fronts. We show the ability of this model to quantitatively reproduce the intermittent dynamics of…

Pattern-forming processes, such as electrodeposition, dielectric breakdown or viscous fingering are often driven by instabilities. Accordingly, the resulting growth patterns are usually highly branched, fractal structures. However, in some…

Pattern Formation and Solitons · Physics 2017-01-04 Michal Pecelerowicz , Piotr Szymczak

The spin market model [S. Bornholdt, Int.J.Mod.Phys. C 12 (2001) 667] is extended into co-evolutionary version, where strategies of interacting and competitive traders are represented by local and global couplings between the nodes of…

Adaptation and Self-Organizing Systems · Physics 2009-11-11 D. Horvath , Z. Kuscsik , M. Gmitra

Interfaces in a model with a single, real nonconserved order parameter and purely dissipative evolution equation are considered. We show that a systematic perturbative approach, called the expansion in width and developed for curved domain…

Soft Condensed Matter · Physics 2009-10-31 H. Arodz , R. Pelka

Extending our previous work on 2D growth for the Laplace equation we study here {\it multidimensional} growth for {\it arbitrary elliptic} equations, describing inhomogeneous and anisotropic pattern formations processes. We find that these…

patt-sol · Physics 2009-10-22 Mark B. Mineev--Weinstein

The Raise and Peel model is a recently proposed one-dimensional statistical model describing a fluctuating interface. The evolution of the model follows from the competition between adsorption and desorption processes. The model is…

Statistical Mechanics · Physics 2009-11-11 Matteo Beccaria , Massimo Campostrini , Alessandra Feo

The short-time and long-time dynamics of the Bak-Sneppen model of biological evolution are investigated using the damage spreading technique. By defining a proper Hamming distance measure, we are able to make it exhibits an initial…

Statistical Mechanics · Physics 2007-05-23 U. Tirnakli , M. L. Lyra

The understanding of neural activity patterns is fundamentally linked to an understanding of how the brain's network architecture shapes dynamical processes. Established approaches rely mostly on deviations of a given network from certain…

Neurons and Cognition · Quantitative Biology 2014-09-19 Marc-Thorsten Huett , Marcus Kaiser , Claus C. Hilgetag

We show that the critical behavior of a driven interface, depinned from quenched random impurities, depends on the isotropy of the medium. In anisotropic media the interface is pinned by a bounding (conducting) surface characteristic of a…

Condensed Matter · Physics 2009-10-22 L. -H. Tang , M. Kardar , D. Dhar

Interactions between neighboring cells are essential for generating or refining patterns in a number of biological systems. We propose a discrete filtering approach to predict how networks of cells modulate spatially varying input signals…

Tissues and Organs · Quantitative Biology 2019-02-14 Melinda Liu Perkins , Murat Arcak

We consider a class of interacting particle models with anisotropic, repulsive-attractive interaction forces whose orientations depend on an underlying tensor field. An example of this class of models is the so-called K\"ucken-Champod model…

In the present work we extend the Bak-Sneppen model for biological evolution by introducing local interactions between species. This ``environmental'' perturbation can modify the intrinsic fitness of each element of the ecology, leading to…

Other Condensed Matter · Physics 2010-10-14 M. Bartolozzi , D. B. Leinweber , A. W. Thomas

We study the patterns generated in finite-time sweeps across symmetry-breaking bifurcations in individual-based models. Similar to the well-known Kibble-Zurek scenario of defect formation, large-scale patterns are generated when model…

Statistical Mechanics · Physics 2013-12-04 Peter Ashcroft , Tobias Galla

Collective and directed motility or swarming is an emergent phenomenon displayed by many self-organized assemblies of active biological matter such as clusters of embryonic cells during tissue development, cancerous cells during tumor…

Biological Physics · Physics 2016-04-05 Katherine Copenhagen , Ajay Gopinathan

Critical wetting transitions under nonequilibrium conditions are studied numerically and analytically by means of an interface-displacement model defined by a Kardar-Parisi-Zhang equation, plus some extra terms representing a limiting,…

Statistical Mechanics · Physics 2009-11-13 Elvira Romera , Francisco de los Santos , Omar Al Hammal , Miguel A. Munoz

Symmetries represent a fundamental constraint for physical systems and relevant new phenomena often emerge as a consequence of their breaking. An important example is provided by space- and time-translational invariance in statistical…

Statistical Mechanics · Physics 2012-12-21 Matteo Marcuzzi , Andrea Gambassi , Michel Pleimling