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Related papers: Polymer translocation induced by adsorption

200 papers

Using Langevin dynamics simulations in three dimensions (3D), we investigate the dynamics of polymer translocation into the regions between two parallel plane walls with separation $R$ under a driving force $F$, respectively. Compared with…

Soft Condensed Matter · Physics 2010-08-18 Kaifu Luo , Ralf Metzler

We employ a multiscale approach to model the translocation of biopolymers through nanometer size pores. Our computational scheme combines microscopic Langevin molecular dynamics (MD) with a mesoscopic lattice Boltzmann (LB) method for the…

Biological Physics · Physics 2011-11-10 Maria Fyta , Simone Melchionna , Efthimios Kaxiras , Sauro Succi

Polymer translocation experiments typically involve anionic polyelectrolytes such as DNA molecules driven through negatively charged nanopores. Quantitative modelling of polymer capture to the nanopore followed by translocation therefore…

Soft Condensed Matter · Physics 2017-10-11 Sahin Buyukdagli , Tapio Ala-Nissila

A directed polymer is considered on a flat substrate with randomly located parallel ridges. It prefers to lie inside wide regions between the ridges. When the transversel width $W=\exp(\lambda L^{1/3})$ is exponential in the longitudinal…

Disordered Systems and Neural Networks · Physics 2009-10-30 Th. M. Nieuwenhuizen

The glass transition is a long-standing unsolved problem in materials science. For polymers, our understanding of glass-formation is particularly poor due to the added complexity of chain connectivity and flexibility; structural relaxation…

Soft Condensed Matter · Physics 2022-05-30 Daniel L. Baker , Matthew Reynolds , Robin Masurel , Peter D. Olmsted , Johan Mattsson

We study the localization and decay properties as well as the thermal conductance of one-dimensional plasmons. Our model contains a Luttinger-liquid part with spatially random plasmon velocity and interaction parameter as well as a…

Strongly Correlated Electrons · Physics 2019-09-26 M. Bard , I. Protopopov , A. Mirlin

We present results from extensive molecular dynamics simulations of collapse transitions of hydrophobic polymers in explicit water focused on understanding effects of lengthscale of the hydrophobic surface and of attractive interactions on…

Statistical Mechanics · Physics 2007-05-23 Manoj V. Athawale , Gaurav Goel , Tuhin Ghosh , Thomas M. Truskett , Shekhar Garde

The non-equilibrium distribution of colloids in a polymer solution under a temperature gradient is studied experimentally. A slight increase of local temperature by a focused laser drives the colloids towards the hot region, resulting in…

Soft Condensed Matter · Physics 2015-05-13 Hong-Ren Jiang , Hirofumi Wada , Natsuhiko Yoshinaga , Masaki Sano

We investigate the translocation of a stiff polymer consisting of M monomers through a nanopore in a membrane, in the presence of binding particles (chaperones) that bind onto the polymer, and partially prevent backsliding of the polymer…

Biomolecules · Quantitative Biology 2015-06-26 T. Ambjoernsson , M. A. Lomholt , R. Metzler

Turbulent thermal convection is characterized by the formation of large-scale structures and strong spatial inhomogeneity. This work addresses the relative heat transport contributions of the large-scale plume ejecting versus plume…

Fluid Dynamics · Physics 2021-04-09 Philipp Reiter , Olga Shishkina , Detlef Lohse , Dominik Krug

Polymer translocation through a nanometer-scale pore assisted by chaperones binding to the polymer is a process encountered in vivo for proteins. Studying the relevant models by computer simulations is computationally demanding.…

Biological Physics · Physics 2017-12-18 P. M. Suhonen , R. P. Linna

Motivated by recent experimental observations, we consider a steady-state Prandtl-Blasius boundary layer flow with polymers above a slightly heated horizontal plate and study how the heat transport might be affected by the polymers. We…

Chaotic Dynamics · Physics 2015-05-27 Roberto Benzi , Emily S. C. Ching. , Vivien W. S. Chu

We measure hole transport in poly(3-hexylthiophene) field effect transistors with channel lengths from 3 $\mu$m down to 200 nm, from room temperature down to 10 K. Near room temperature effective mobilities inferred from linear regime…

Mesoscale and Nanoscale Physics · Physics 2007-05-23 B. H. Hamadani , D. Natelson

To stabilize the working temperature of an equipment, a solid-state thermal resistor is usually a requisite, which could adjust its heat conductance continuously according to the temperature. In this work, the thermal conductivity and the…

Mesoscale and Nanoscale Physics · Physics 2025-01-14 Congliang Huang , Changkang Du , Qiangqiang Huang , Xiaodong Wang

The mechanism of thermal conductivity in amorphous polymers, especially polymer fibers, is unclear in comparison with that in inorganic materials. Here, we report the observation of across over of heat conduction behavior from three…

We perform numerical simulations of an active fully flexible self-avoiding polymer as a function of the quality of the embedding solvent described in terms of an effective monomer-monomer interaction. Specifically, by extracting the Flory…

Soft Condensed Matter · Physics 2020-10-19 S. Das , N. Kennedy , A. Cacciuto

In this paper we present theoretical analysis of the electron transport in conducting polymers. We concentrate on the study of the effects of temperature on characteristics of the transport. We treat a conducting polymers in a metal state…

Materials Science · Physics 2008-10-23 Natalya A. Zimbovskaya

By means of Metropolis Monte Carlo simulations of a coarse-grained model for flexible polymers, we investigate how the integrated autocorrelation times of different energetic and structural quantities depend on the temperature. We show…

Computational Physics · Physics 2014-08-19 Kai Qi , Michael Bachmann

We revisit the Fokker-Planck based theory of driven polymer translocation through a narrow nanopore. A bead-spring model of a uniformly charged polyelectrolyte chain translocating through a semi-implicit model of a nanopore embedded in a…

Soft Condensed Matter · Physics 2025-12-02 Bhavesh R. Sarode , Harshwardhan H. Katkar

We consider the adsorption of a random heteropolymer onto an interface within the model by Garel et al. [1] by taking into account self-interactions between the monomers. Within the replica trick and by using a self-consistent preaveraging…

Soft Condensed Matter · Physics 2009-11-07 Valerii A. Brazhnyi , Semjon Stepanow