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Monte Carlo simulations of coarse-grained polymers provide a useful tool to deepen the understanding of conformational and statistical properties of polymers both in physical as well as in biological systems. In this study we sample compact…

Soft Condensed Matter · Physics 2009-05-07 Manfred Bohn , Dieter W. Heermann

Researchers have repeatedly found that the ends of an RNA sequence are significantly closer than expected for a random linear chain. However, we prove that the ends of a branched structure are almost certainly close. Our results are…

Combinatorics · Mathematics 2026-04-20 Torin Greenwood , Christine Heitsch

Motivated by recent nanofluidics experiments, we use Brownian dynamics and Monte Carlo simulations to study the conformation, organization and dynamics of two polymer chains confined to a single box-like cavity. The polymers are modeled as…

Soft Condensed Matter · Physics 2021-05-19 James M. Polson , Desiree A. Rehel

In the single-source sandpile model, a number $N$ grains of sand are positioned at a central vertex on the 2-dimensional grid $\mathbb{Z}^2$. We study the stabilisation of this configuration for a stochastic sandpile model based on a…

Probability · Mathematics 2022-08-23 Thomas Selig , Haoyue Zhu

Co-assembly of inorganic nanoparticles (NPs) and nanostructured polymer matrix represents an intricate interplay of enthalpic or entropic forces. Particle size largely affects the phase behavior of the nanocomposite. Theoretical studies…

Soft Condensed Matter · Physics 2022-04-25 Le Ma , Hejin Huang , Peter Ercius , Alfredo Alexander-Katz , Ting Xu

We theoretically and numerically studied ordering of "colloidal ionic clusters" on periodic substrate potentials as those generated by optical trapping. Each cluster consists of three charged spherical colloids: two negatively and one…

Soft Condensed Matter · Physics 2015-05-27 Samir El Shawish , Jure Dobnikar , Emmanuel Trizac

Experiments using the Surface Force Apparatus (SFA) have found anomalously long-ranged interactions between charged surfaces in concentrated salt solutions. Ion clustering have been suggested as a possible origin of this behaviour. In this…

Soft Condensed Matter · Physics 2025-08-05 David Ribar , Clifford E. Woodward , Jan Forsman

A polymer folding model on the square lattice is constructed with attractive contact interactions of strength 1/c^2, 0<c<1. The corresponding model on a dynamical random lattice, with freely fluctuating co-ordination number at each vertex,…

Condensed Matter · Physics 2016-08-31 S. Dalley

The shape of a polymer plays an important role in determining its interactions with other molecules and with the environment, and is in turn affected by both of them. As a consequence, in the literature the shape properties of a chain in…

Soft Condensed Matter · Physics 2017-07-26 Alberto S. Sassi , Salvatore Assenza , Paolo De Los Rios

We address the occurrence of narrow planetary rings and some of their structural properties, in particular when the rings are shepherded. We consider the problem as Hamiltonian {\it scattering} of a large number of non-interacting massless…

Astrophysics · Physics 2009-11-11 O. Merlo , L. Benet

During the last 3 years, our group has investigated extensively the complexation mechanism between neutral-polyelectrolyte block copolymers with oppositely charged species. These species are surfactant micelles, multivalent counterions and…

Soft Condensed Matter · Physics 2007-05-23 J. -F. Berret , P. Herve , M. Morvan , K. Yokota , M. Destarac , J. Oberdisse , I. Grillo , R. Schweins

The form factor of partially sulfonated polystyrene PSSNa (degree of sulfonation f =1, 0.72, 0.64 and 0.36), at polymer concentration 0.17M and 0.34M, without or with added salt (0 M, 0.34M, & 0.68M), is measured by Small Angle Neutron…

Soft Condensed Matter · Physics 2009-04-20 François Boué , Marie Noelle Spiteri , Claudine Williams

In random heteropolymer globules with short-range interactions between the monomers, freezing takes place at the microscopic length scale only, and can be described by a 1-step replica symmetry breaking. The fact that the long-range Coulomb…

Soft Condensed Matter · Physics 2009-10-31 Hindrik Jan Angerman , Eugene Shakhnovich

We present our results on properties of ground states for nucleonic systems in the presence of random two-body interactions. In particular we present probability distributions for parity, seniority, spectroscopic (i.e., in the laboratory…

Nuclear Theory · Physics 2007-05-23 Y. M. Zhao , A. Arima , N. Shimizu , K. Ogawa , N. Yoshinaga , O. Scholten

We map out the solid-state morphologies formed by model soft-pearl-necklace polymers as a function of bending stiffness $k_b$ spanning the range from fully flexible to rodlike chains. The ratio of Kuhn length to bead diameter ($l_K/r_0$)…

Soft Condensed Matter · Physics 2015-10-28 Hong T. Nguyen , Tyler B. Smith , Robert S. Hoy , Nikos Ch. Karayiannis

Mn has been found to self-assemble into atomic chains running perpendicular to the surface dimer reconstruction on Si(001). They differ from other atomic chains by a striking asymmetric appearance in filled state scanning tunneling…

Mesoscale and Nanoscale Physics · Physics 2015-12-23 R. Villarreal , M. Longobardi , S. A. Köster , Ch. J. Kirkham , D. Bowler , Ch. Renner

The dynamical response of a tethered semiflexible polymer with self-attractive interactions and subjected to an external force field is numerically investigated by varying stiffness and self-interaction strength. The chain is confined in…

Soft Condensed Matter · Physics 2022-11-09 A. Lamura

The ground-state and the transport properties of graphene subject to the potential of in-plane charged impurities are studied. The screening of the impurity potential is shown to be nonlinear, producing a fractal structure of electron and…

Mesoscale and Nanoscale Physics · Physics 2009-12-02 M. M. Fogler

We investigate the effects of randomness in a strongly correlated electron model in one-dimension at half-filling. The ground state correlation functions are exactly written by products of 3$\times$3 transfer matrices and are evaluated…

Strongly Correlated Electrons · Physics 2009-10-28 Masanori Yamanaka , Mahito Kohmoto

We analyze the motion of individual beads of a polymer chain using a discrete version of De Gennes' reptation model that describes the motion of a polymer through an ordered lattice of obstacles. The motion within the tube can be evaluated…

Soft Condensed Matter · Physics 2016-08-15 U. Ebert , L. Schäfer , A. Baumgärtner
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