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Many biological processes are supported by special molecules, called motor proteins or molecular motors, that transport cellular cargoes along linear protein filaments and can reversibly associate to their tracks. Stimulated by these…

Statistical Mechanics · Physics 2021-11-17 Akriti Jindal , Anatoly B. Kolomeisky , Arvind Kumar Gupta

The exact stationary state of an asymmetric exclusion process with fully parallel dynamics is obtained using the matrix product Ansatz. We give a simple derivation for the deterministic case by a physical interpretation of the dimension of…

Statistical Mechanics · Physics 2011-11-29 Jan de Gier , Bernard Nienhuis

Within the formalism of matrix product ansatz, we study a two-species asymmetric exclusion process with backward and forward site-ordered sequential update. This model, which was originally introduced with the random sequential update,…

Statistical Mechanics · Physics 2009-10-31 M. E. Fouladvand , H. -W. Lee

We consider the partially asymmetric simple exclusion process (PASEP) when its steady-state probability distribution function can be written in terms of a linear superposition of product measures with a finite number of shocks. In this case…

Statistical Mechanics · Physics 2010-06-10 Farhad H. Jafarpour , Somayeh Zeraati

We study the steady-state behavior of a driven non-equilibrium lattice gas of hard-core particles with next-nearest-neighbor interaction. We calculate the exact stationary distribution of the periodic system and for a particular line in the…

Statistical Mechanics · Physics 2009-10-31 T. Antal , G. M. Schütz

Generic inhomogeneous steady states in an asymmetric exclusion process on a ring with a pair of point bottlenecks are studied. We show that, due to an underlying universal feature, measurements of coarse-grained steady-state densities in…

Statistical Mechanics · Physics 2014-08-15 Niladri Sarkar , Abhik Basu

The totally asymmetric simple exclusion process along with particle adsorption and evaporation kinetics is a model of boundary-induced nonequilibrium phase transition. In the continuum limit, the average particle density across the system…

Statistical Mechanics · Physics 2018-04-25 Sutapa Mukherji , Somendra M. Bhattacharjee

We investigate a model for driven exclusion processes where internal states are assigned to the particles. The latter account for diverse situations, ranging from spin states in spintronics to parallel lanes in intracellular or vehicular…

Statistical Mechanics · Physics 2007-06-13 Tobias Reichenbach , Erwin Frey , Thomas Franosch

This paper studies transfer learning for estimating the mean of random functions based on discretely sampled data, where, in addition to observations from the target distribution, auxiliary samples from similar but distinct source…

Statistics Theory · Mathematics 2024-03-29 T. Tony Cai , Dongwoo Kim , Hongming Pu

Traffic flow at low densities (free traffic) is characterized by a quasi-one-dimensional relation between traffic flow and vehicle density, while no such fundamental diagram exists for `synchronized' congested traffic flow. Instead, a…

Statistical Mechanics · Physics 2009-11-07 Dirk Helbing , Davide Batic , Martin Schoenhof , Martin Treiber

A one dimensional disordered particle hopping rate asymmetric exclusion process (ASEP) with open boundaries and a random sequential dynamics is studied analytically. Combining the exact results of the steady states in the pure case with a…

Statistical Mechanics · Physics 2009-11-13 M. Loulidi

Exact mean field equations are derived analytically to give the fundamental diagrams, i.e., the average speed - car density relations, for the Fukui-Ishibashi one-dimensional traffic flow cellular automaton model of high speed vehicles…

Condensed Matter · Physics 2009-10-31 Bing-Hong Wang , Lei Wang , P. M. Hui , Bambi Hu

We introduce and study a family of cooperative exclusion processes whose microscopic dynamics is governed by selective kinetic constraints. They display, in sharp contrast to the simple symmetric exclusion process, density profiles that can…

Statistical Mechanics · Physics 2019-11-27 Mauro Sellitto

The totally asymmetric simple exclusion process in discrete time is considered on finite rings with fixed number of particles. A translation-invariant version of the backward-ordered sequential update is defined for periodic boundary…

Soft Condensed Matter · Physics 2007-05-23 J. G. Brankov , Vl. V. Papoyan , V. S. Poghosyan , V. B. Priezzhev

Diffusive transport is a universal phenomenon, throughout both biological and physical sciences, and models of diffusion are routinely used to interrogate diffusion-driven processes. However, most models neglect to take into account the…

Quantitative Methods · Quantitative Biology 2015-10-28 Paul R. Taylor , Christian A. Yates , Matthew J. Simpson , Ruth E. Baker

We introduce a model for stochastic transport on a one-dimensional substrate with particles assuming different conformations during their stepping cycles. These conformations correspond to different footprints on the substrate: in order to…

Statistical Mechanics · Physics 2019-06-26 Yvan Rousset , Luca Ciandrini , Norbert Kern

Within the formalism of martix product ansatz, we study a two-species asymmetric exclusion process with backward and forward site-ordered sequential update. This model describes a two-way traffic flow with a dynamical impurity and shows a…

Statistical Mechanics · Physics 2007-05-23 M. Ebrahim Fouladvand , H. Woo Lee

Although real-world complex systems typically interact through sparse and heterogeneous networks, analytic solutions of their dynamics are limited to models with all-to-all interactions. Here, we solve the dynamics of a broad range of…

Disordered Systems and Neural Networks · Physics 2025-01-28 Fernando L. Metz

We propose a new approach to the transfer operator based analysis of the conformation dynamics of molecules. It is based on a statistical independence ansatz for the eigenfunctions of the operator related to a partitioning into subsystems.…

Numerical Analysis · Mathematics 2009-07-13 Gero Friesecke , Oliver Junge , Péter Koltai

We present a study of exclusion processes on networks as models for complex transport phenomena and in particular for active transport of motor proteins along the cytoskeleton. We argue that active transport processes on networks…

Statistical Mechanics · Physics 2013-08-12 I. Neri , N. Kern , A. Parmeggiani