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A stochastic model is used to assess the effect of external parameters on the development of submerged biofilms on smooth and rough surfaces. The model includes basic cellular mechanisms, such as division and spreading, together with an…

Soft Condensed Matter · Physics 2024-01-17 David Rodriguez , Baldvin Einarsson , Ana Carpio

The rate of curvature-driven grain growth in polycrystalline materials is well-known to be limited by interface dissipation. We show analytically and by simulations that, for systems forming modulated phases or non-equilibrium patterns with…

Materials Science · Physics 2015-06-15 Ari Adland , Yechuan Xu , Alain Karma

We analyze the surface morphology of metals after plastic deformation over a range of scales from 10 nm to 2 mm, using a combination of atomic force microscopy and scanning white-light interferometry. We demonstrate that an initially smooth…

Statistical Mechanics · Physics 2009-11-10 Michael Zaiser , Frederic Maqdani , Vasileios Koutsos , Elias Aifantis

Via molecular dynamics simulations, we study the kinetics in a phase separating active matter model. Quantitative results for the isotropic bicontinuous pattern formation, its growth and aging, studied, respectively, via the two-point…

Soft Condensed Matter · Physics 2016-05-27 Subir K. Das

What is a diffusion model actually doing when it turns noise into a photograph? We show that the deterministic DDIM reverse chain operates as a Partitioned Iterated Function System (PIFS) and that this framework serves as a unified design…

Machine Learning · Computer Science 2026-03-16 Ann Dooms

A d-cone is the shape one obtains when pushing an elastic sheet at its center into a hollow cylinder. In a simple model, one can treat the elastic sheet in the deformed configuration as a developable surface with a singularity at the tip of…

Analysis of PDEs · Mathematics 2014-09-11 Heiner Olbermann

The relative importance of the intrinsic and extrinsic factors determining the variety of geometric shapes exhibited by dendritic trees remains unclear. This question was addressed by developing a model of the growth of dendritic trees…

Neurons and Cognition · Quantitative Biology 2007-05-23 Artur Luczak

Many growth processes lead to intriguing stochastic patterns and complex fractal structures which exhibit local scale invariance properties. Such structures can often be described effectively by space-time trajectories of interacting…

Statistical Mechanics · Physics 2013-06-07 Adnan Ali , Robin C. Ball , Stefan Grosskinsky , Ellak Somfai

We propose a new type of morphological instability in the diffusion-limited growth of faceted crystals from the vapor phase that can explain the formation of thin ice plates at temperatures near -15 C. The instability appears when the…

Materials Science · Physics 2007-05-23 Kenneth G. Libbrecht

We report a new approach to achieve growth of highly crystalline nickel nanoparticles over an extended range of sizes (up to 100 nm in diameter) and time scales (up to several hours) by diffusional transport of constituent atoms. The…

Materials Science · Physics 2013-04-23 Igor Sevonkaev , Vladimir Privman , Dan Goia

We study ion condensation onto a patterned surface of alternating charges. The competition between self-energy and ion-surface interactions leads to the formation of ionic crystalline structures at low temperatures. We consider different…

Statistical Mechanics · Physics 2009-11-13 Yuri S. Velichko , Francisco J. Solis , Sharon M. Loverde , Monica Olvera de la Cruz

We present an investigation into diffusion models for molecular generation, with the aim of better understanding how their predictions compare to the results of physics-based calculations. The investigation into these models is driven by…

Motivated by recent experimental studies in microbiology, we suggest a modification of the classic ballistic deposition model of surface growth, where the memory of a deposition at a site induces more depositions at that site or its…

Cellular Automata and Lattice Gases · Physics 2022-02-24 Ahmed Roman , Ruomin Zhu , Ilya Nemenman

Bacteria can form a great variety of spatially heterogeneous cell density patterns, ranging from simple concentric rings to dynamical spiral waves appearing in growing colonies. These pattern formation phenomena are important as they…

Populations and Evolution · Quantitative Biology 2025-01-17 John S. Chuang , Riccardo Rao , Stanislas Leibler

We present results of numerical simulations of kinetic roughening for a growth model with surface diffusion (the Wolf-Villain model) in 3+1 and 4+1~dimensions using lattices of a linear size up to $L=64$ in 3+1~D and $L=32$ in 4+1~D. The…

Condensed Matter · Physics 2009-10-22 P. Šmilauer , M. Kotrla

When beneficial mutations are relatively common, competition between multiple unfixed mutations can reduce the rate of fixation in well-mixed asexual populations. We introduce a one dimensional model with a steady accumulation of beneficial…

Populations and Evolution · Quantitative Biology 2013-02-19 Jakub Otwinowski , Stefan Boettcher

We present a continuum model describing dissolution and growth of a crystal contact confined against a substrate. Diffusion and hydrodynamics in the liquid film separating the crystal and the substrate are modeled within the lubrication…

Soft Condensed Matter · Physics 2018-01-31 Luca Gagliardi , Olivier Pierre-Louis

Tip growth is a growth stage which occurs in fungal cells. During tip growth, the cell exhibits continuous extreme lengthwise growth while its shape remains qualitatively the same. A model for single celled fungal tip growth is given by the…

Dynamical Systems · Mathematics 2020-07-15 T. G. de Jong , A. E. Sterk , H. W. Broer

We study the diffusion and submonolayer spreading of chainlike molecules on surfaces. Using the fluctuating bond model we extract the collective and tracer diffusion coefficients D_c and D_t with a variety of methods. We show that…

Condensed Matter · Physics 2009-10-28 T. Ala-Nissila , S. Herminghaus , T. Hjelt , P. Leiderer

When a flat sample of medium density fibreboard (MDF) is exposed to radiant heat in an inert atmosphere, primary crack patterns suddenly start to appear over the entire surface before pyrolysis and any charring occurs. Contrary to common…

Soft Condensed Matter · Physics 2019-05-08 Andrea Ferrantelli , Djebar Baroudi , Sergei Khakalo , Kaiyuan Li
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