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Here we would like to discuss the light transmission modulation by periodic and disordered one dimensional (1D) photonic structures. In particular, we will present some theoretical and experimental findings highlighting the peculiar optical…

Disordered proteins and nucleic acids play key roles in cellular function and disease. Here we review recent advances in the computational exploration of the conformational dynamics of flexible biomolecules. We focus on hierarchical chain…

Chemical Physics · Physics 2022-10-31 Lisa M. Pietrek , Lukas S. Stelzl , Gerhard Hummer

The spatial structure of the cell is highly organized at all levels: from small complexes and assemblies, to local nano- and micro-clusters, to global, micrometer scales across and between cells. We suggest that this multiscale spatial cell…

Biomolecules · Quantitative Biology 2013-08-06 Ruth Nussinov

The purpose of this present paper is to investigate the geometric structure of regular overdetermined systems of second order with two independent and one dependent variables from the point of view of rank 2 prolongations. Utilizing this…

Differential Geometry · Mathematics 2012-10-19 Takahiro Noda

We present a general computational theory of stem cell networks and their developmental dynamics. Stem cell networks are special cases of developmental control networks. Our theory generates a natural classification of all possible stem…

Other Quantitative Biology · Quantitative Biology 2016-07-18 Eric Werner

Biologically inspired pressure actuated cellular structures can alter their shape through pressure variations. Previous work introduced a computational framework for pressure actuated cellular structures which was limited to two cell rows…

Quantitative Methods · Quantitative Biology 2017-04-10 Markus Pagitz , Remco I. Leine

Topological and geometrical properties and the associated topological defects find a rapidly growing interest in studying the interplay between mechanics and the collective behavior of cells on the tissue level. We here test if well studied…

Soft Condensed Matter · Physics 2023-09-06 Dennis Wenzel , Simon Praetorius , Axel Voigt

In this paper we will present a way of examining the Stokes structure of certain irregular singular $\mathcal D$-modules, namely the direct image of exponentially twisted regular singular meromorphic connections, in a topological point of…

Algebraic Geometry · Mathematics 2015-06-22 Hedwig Heizinger

This work targets the influence of disorder on the relaxed structure and macroscopic mechanical properties of elastic networks. We construct network classes of different types of disorder (length, topology and stiffness), which are…

Soft Condensed Matter · Physics 2025-08-29 Stefanie Heyden , Mohit Pundir , Eric R. Dufresne , David S. Kammer

Cells forming various epithelial tissues have a strikingly universal distribution for the number of their edges. It is generally assumed that this topological feature is predefined by the statistics of individual cell divisions in growing…

Topological defects, which are singular points in a director field, play a major role in shaping active systems. Here, we experimentally study topological defects and the flow patterns around them, that are formed during the highly rapid…

Soft Condensed Matter · Physics 2024-03-20 Victor Yashunsky , Daniel J. G. Pearce , Gil Ariel , Avraham Be'er

We define 2-calibrated structures, which are analogs of symplectic structures in odd dimensions. We show the existence of differential topological constructions compatible with the structure.

Differential Geometry · Mathematics 2018-07-31 David Martinez Torres

In many areas of applied geometric/numeric computational mathematics, including geo-mapping, computer vision, computer graphics, finite element analysis, medical imaging, geometric design, and solid modeling, one has to compute incidences,…

Computational Geometry · Computer Science 2019-11-20 Alberto Paoluzzi , Vadim Shapiro , Antonio DiCarlo , Francesco Furiani , Giulio Martella , Giorgio Scorzelli

Biological systems exploit self-assembly to create complex structures whose arrangements are finely controlled from molecular to mesoscopic level. Herein we report an example of using fully synthetic systems that mimic two levels of…

Unlike other tissue types, like epithelial tissue, which consist of cells with a much more homogeneous structure and function, the nervous tissue spans in a complex multilayer environment whose topographical features display a large…

Biological Physics · Physics 2017-05-12 C. Simitzi , A. Ranella , E. Stratakis

We study the mathematical properties of a general model of cell division structured with several internal variables. We begin with a simpler and specific model with two variables, we solve the eigenvalue problem with strong or weak…

Analysis of PDEs · Mathematics 2008-10-08 Marie Doumic Jauffret

The shell map is a very simple representation of the structure of foams, combining the geometrical (random tiling) and dynamical (loss of information from an arbitrary cell out) aspects of disorder. The structure is built from the central…

Disordered Systems and Neural Networks · Physics 2007-05-23 Tomaso Aste

Geometry of networks endowed with a causal structure is discussed using the conventional framework of equilibrium statistical mechanics. The popular growing network models appear as particular causal models. We focus on a class of tree…

Statistical Mechanics · Physics 2009-11-07 P. Bialas , Z. Burda , J. Jurkiewicz , A. Krzywicki

Open cellular solids usually possess random microstructures that may contain a characteristic length scale, such as the cell size. This gives rise to size dependent mechanical properties where large systems behave differently from small…

Materials Science · Physics 2018-01-03 Stefan Liebenstein , Stefan Sandfeld , Michael Zaiser

We investigate cosmological structure formation seeded by topological defects which may form during a phase transition in the early universe. First we derive a partially new, local and gauge invariant system of perturbation equations to…

Astrophysics · Physics 2009-10-28 R. Durrer , Z. -H. Zhou