Related papers: Phase Transitions of Single Semi-stiff Polymer Cha…
We study the force-induced unfolding of a homopolymer on the three dimensional Sierpinski gasket. The polymer is subject to a contact energy between nearest neighbour sites not consecutive along the chain and to a stretching force. The…
In a recent letter [D. Poletti et al., EPL 93, 37008 (2011)] a model of attractive spinless fermions on the honeycomb lattice at half filling has been studied by mean-field theory, where distinct homogenous phases at rather large attraction…
A microscopic theory of the free energy barriers and folding routes for minimally frustrated proteins is presented, greatly expanding on the presentation of the variational approach outlined previously [J. J. Portman, S. Takada, P. G.…
The widely used double-bridging hybrid (DBH) method for equilibrating simulated entangled polymer melts [R. Auhl et al., J. Chem. Phys. v. 119, p. 12718, 2003] loses its effectiveness as chain stiffness increases into the semiflexible…
At high magnetic field, the semiclassical approximation which underlies the Ginzburg-Landau (GL) theory of the mixed state of type II superconductors breaks down. In a quasi-1D superconductor (weakly coupled chains system) with an {\it open…
In an attempt to extend the range of model jamming transitions, we simulate systems of athermal particles which attract when slightly overlapping. Following from recent work on purely repulsive systems, dynamics are neglected and relaxation…
The instant crystallization of semi-crystalline polymers have become possible following the recent advances in Fast Scanning Calorimetry (FSC) and enables to make a bridge between the time scale available experimentally with those…
We study the dynamics of flexible, semiflexible, and self-avoiding polymer chains moving under a Kramers metastable potential. Due to thermal noise, the polymers, initially placed in the metastable well, can cross the potential barrier, but…
By investigating the compressibility of one-dimensional lattice fermions at various filling factors, we study the phase separation and re-entrant transition within the framework of the Bethe ansatz method. We model the system using the…
The ability of biomolecules to exert forces on their surroundings or resist compression from the environment is essential in a variety of biologically relevant contexts. As has been understood for centuries, slender rods can only be…
Within a mean-field approximation, the ground state and finite temperature phase diagrams of the two-dimensional Kondo lattice model have been carefully studied as functions of the Kondo coupling $J$ and the conduction electron…
We study a one dimensional nonequilibrium lattice model with competing features of particle attraction and non-local hops. The system is similar to a zero range process (ZRP) with attractive particles but the particles can make both local…
Motivated by the structure of networks of cross-linked cytoskeletal biopolymers, we study the orientationally ordered phases in two-dimensional networks of randomly cross-linked semiflexible polymers. We consider permanent cross-links which…
We analyze equilibrium properties and adsorption desorption phase transition behaviour of a linear semiflexible copolymer chain under constrained geometrical situation on square lattice in a good solvent. One dimensional stair shaped line…
Molecular dynamics simulations are used to investigate the conformations of a single polymer chain, represented by the Kremer-Grest bead-spring model, in a solution with a Lennard-Jones liquid as the solvent when the interaction strength…
The competition and interplay between charge-density wave and superconductivity have become a central subject for quasi-2D compounds. Some of these materials, such as the transition-metal dichalcogenides, exhibit strong electron-phonon…
Phase transitions in 1/4-filled quasi-one-dimensional molecular conductors are studied theoretically on the basis of extended Hubbard chains including electron-lattice interactions coupled by interchain Coulomb repulsion. We apply the…
We discuss uniform sampling algorithms that are based on stochastic growth methods, using sampling of extreme configurations of polymers in simple lattice models as a motivation. We shall show how a series of clever enhancements to a…
We use Monte Carlo simulations to study polymer melts consisting of fully flexible and moderately stiff chains in the bond fluctuation model at a volume fraction $0.5$. In order to reduce the local density fluctuations, we test a…
We present a theoretical study of the compressibility, $\kappa$, in a Fermi gas with attractive contact interactions, providing predictions for the strongly-attractive regime and the superfluid phase. Our work emphasizes the compressibility…